Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02624 atgccagtTGCCAGTTGCCACCAATCACCTCTCACAATTTCTTCGCCCGCCAAATACAAAACCTCTCCCTCTCACTCGCTCACTCTCACAAAGGTCACCCATTCAACTACATCAACCAAGTCAAGTTCTAATTTCTGCTTCATCACCAGCGAGGCATGTGAGAAGTGCCAGAAAGAGAAGAGGAAGACCATTAATGGAGATGATTTGTTATGGGCGATGGCCACTTTAGGATTTGAAGACTACATAGAACCTCTTAAAGTGTACCTAGCAAGATTCAGAGAGTTGGAGGGTGACACCAAAGGATCTGCTAGAACTGGCGATGGATCTGTTAGACGAGATCAAGTTGGTCTAGCGGGTCAAAATACTCAGCTTGTTCATCAGGGTTCACTGAATTATATTAGTTCCCAGGTGCAGCAACAACATTTGGTTATTCCTTCAATGCAAAGCCATGAATAG 456 0.4364 MPVASCHQSPLTISSPAKYKTSPSHSLTLTKVTHSTTSTKSSSNFCFITSEACEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARFRELEGDTKGSARTGDGSVRRDQVGLAGQNTQLVHQGSLNYISSQVQQQHLVIPSMQSHE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02624 151 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 73 IPR003958 -
Aip09g02624 151 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Aip09g02624 151 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Aip09g02624 151 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Aip09g02624 151 PANTHER BNAA04G21250D PROTEIN 43 131 - -
Aip09g02624 151 Gene3D Histone, subunit A 20 140 IPR009072 GO:0046982
Aip09g02624 151 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 43 131 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aip09g02624 151 SUPERFAMILY Histone-fold 46 135 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02624 Aip-Chr9 123252164 123254905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02624 47 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.000 1.16e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aip09g02624 CBFD_NFYB_HMF 2.5e-07 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02624 K08065 - gmx:100815883 190.66