Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02609 ATGGAGCAGGAAGAACACGAAGTGTACGGTGCCGACATCCCCGACGAAGCTGACATGGACGCCGACGCCGACCTTCAGGAACACGACGACGACCATGACAACAACCACCATGCCTCCTCTCACGCTAACAAGGACTTGGAGGACATGAAGAAGAGGCTGAAGGAGATTGAGGAAGAAGCTAGCGCCCTACGTGAAATGCAGGCCAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATTCAACTGGATCTTCTGCAAGTCAAGCTGAAAAGGAGGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTTGACTATGCATGCACACCTGAAGAAGTTCAACAGCATTTTCAGTCGTGTGGAACTGTGAACAGAGTTACAATATTGACAGACAAATTTGGGCAGCCAAAAGGATTTGCTTATGTAGAGTTCGTTGAGATAGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCTAAGCGTACAAATGTTCCTGGGATGAAACAGTATTTTGGAAGACGACCTGGGGGTTTCCGATCCAGGAGGCCTTTCATGCCTGCTCCATTCTATCCACCATATGGTTATGGAAGGGTCCCAAGTTGTCGGAAGAGTTCGTTTGCCACTACAAGGATCTTTTGTCTCGTCACTGAGCCCACTACCCTGGCTGATAACACCTCACCACCCAACAACACAGAACCAACAGATCCTGGTGCTAATAACCCAACATCCCACATCAAGGAACCCATTACCAACAATAATGCTAATCAAGCTACTACTACAAAGCCTAACAGGAAGACTCCTCCAATTTGCCCAAAGACTAAACCCAAGGAAAATGCAATCTCAAAGCCAAAACCCAACAGTACATCTTCTTCCAAGCCCAAGAGAAGCTCGAAGCCCAGTTACAAAACCAAAGCCTATTGCACAAGGTCTGCTTCAAGGGTGAGGCAAGTCCATCAAAGTCTCAAGAAAAAACAAGTTGTAATGTTGTCTTCTTCTGAAGATGAACACACCATAGAGGATAGTTCATATGAACCTGGAGGAGATGATAGCTCAAGTGGAGATGAAGAACTTGACAACGCTTTGGACCTAGGTGCAAAGTCTGATGGAGCCAACTCCTGGCACTCCGAGGAGCTCAAGACTCCTCCCCCTTCAGAAGATGAATTTTCAGAAGAAGATCCTGATGATGTTTTTCCAGTATTTAGAGATGctgcagctgccgctgctgctaagactaaATCCAATCCACAAGGAAATGCAGCATCAGGATCAACTGTTGATTCGAATACTGTCACACCAGAAGCTATAGATGTTCATCCACCTTGTGCGAATCAAGATGCACCCACAAGTCAACCTCCTCCAGATCCTGCACCCCAGCCCGTTGATGTCCAAGAAGTTGAGATTGACATTTCTCAACCCAACTTCTCAGATGCACAAGAGTCTCAAGAGGcactacctctgaggccatccaagttgtag 1506 0.4456 MEQEEHEVYGADIPDEADMDADADLQEHDDDHDNNHHASSHANKDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSTGSSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRRPGGFRSRRPFMPAPFYPPYGYGRVPSCRKSSFATTRIFCLVTEPTTLADNTSPPNNTEPTDPGANNPTSHIKEPITNNNANQATTTKPNRKTPPICPKTKPKENAISKPKPNSTSSSKPKRSSKPSYKTKAYCTRSASRVRQVHQSLKKKQVVMLSSSEDEHTIEDSSYEPGGDDSSSGDEELDNALDLGAKSDGANSWHSEELKTPPPSEDEFSEEDPDDVFPVFRDAAAAAAAKTKSNPQGNAASGSTVDSNTVTPEAIDVHPPCANQDAPTSQPPPDPAPQPVDVQEVEIDISQPNFSDAQESQEALPLRPSKL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02609 501 MobiDBLite consensus disorder prediction 1 94 - -
Aip09g02609 501 CDD RRM_II_PABPs 97 168 - -
Aip09g02609 501 Coils Coil 39 73 - -
Aip09g02609 501 MobiDBLite consensus disorder prediction 421 441 - -
Aip09g02609 501 MobiDBLite consensus disorder prediction 455 469 - -
Aip09g02609 501 MobiDBLite consensus disorder prediction 230 276 - -
Aip09g02609 501 MobiDBLite consensus disorder prediction 478 492 - -
Aip09g02609 501 SMART rrm1_1 97 168 IPR000504 GO:0003723
Aip09g02609 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Aip09g02609 501 Gene3D - 31 169 IPR012677 -
Aip09g02609 501 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 214 - -
Aip09g02609 501 MobiDBLite consensus disorder prediction 290 325 - -
Aip09g02609 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 172 IPR000504 GO:0003723
Aip09g02609 501 MobiDBLite consensus disorder prediction 28 72 - -
Aip09g02609 501 SUPERFAMILY RNA-binding domain, RBD 86 193 IPR035979 GO:0003676
Aip09g02609 501 MobiDBLite consensus disorder prediction 230 501 - -
Aip09g02609 501 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 214 - -
Aip09g02609 501 MobiDBLite consensus disorder prediction 338 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02609 Aip-Chr9 122698420 122707164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02609 97 168 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 4.09e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02609 K14396 - gmx:100527545 350.903