Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02567 ATGAAGCAATTGACTGAGGATCATAAAAGGAGAATGCTTATAGAACGAATGCAGGGTGAAAGAGATAAATGGCTTGCTGCGATCAACATATCCGTTGGTCATATTGAAGCAATGGCAGCTAGGTATGATCTCATCAAGTATATCAATGCTGATCCAGAGCATAAGGTGTGGAAGCTCAAAGTACGTGTCATTAGACTTTGGACCGTTTCTCACTTTGCAAATTCTAGGGTGAAGGCACCTATTGAGATGGTTGTCCTTGATGAAGAGGGGGATACAATTCAATGCTCTATTAAAGGCATATTTGTTCCTATCTTCGAGGGCCTACTCGCTGAGAACAACGTGTACGTGGTCACTAATTTTGCAGTTACTTTAAATACCATTAAGTTCAAGCCTACTAGACACGAATTTAGAATCAACTTCAAGAGGGACACGATTGTGCGTCTGGTACAAGACTCTTCAGTTCCATTGAACGGATTCAATTTTATTCTGTTCAAAAAAATTCATGCAGAGTATAAAAAAGATGGTTATTTAGTTGATGTGATAGGTCAACTTGCCTCTAAGGGTAACTTGGTTGAGTTCACACGGGACGGGAAGCCATCAAGTTATATCACGATAGAACTTGATGATCTTGAGAGTGGACAGAAATTAAGGGTAACGTGGTGGCAGACTTTGGCTTTTAATTTGCTCAAATATTTGGAGGAACACCCGTGTCTTACCTATGTGGTTATTCTCCAAATGGGCAAGATAAAATTTTATAGTGGGGCCATGGGTGTTTCCAACATAAACTACAATTCGAAATTGTTTATCAATGTTGAGTTTTCAGCTGCCAGGATTTCTTTGCAAGTCTACAAAACAATTGCCGAGATAAAGAAGCATAATCAGGATGCTGTATTTGTTACTGCCGGGACAATTAAGGAAGTTGAGACTGAGTTTGATTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTAAGGGAACTTGAAAAAAGATATTTCTGCCCAATTGCGTTGAAGACTACGGGTTCTATGTGCCAAGTTTTGAATGGTTATGATGATTCAATGTTGGATGTGGATATGGAAGATAATTTTATACCATCCTCAGAAACCTTAGACGGTATGTAA 1125 0.3938 MKQLTEDHKRRMLIERMQGERDKWLAAINISVGHIEAMAARYDLIKYINADPEHKVWKLKVRVIRLWTVSHFANSRVKAPIEMVVLDEEGDTIQCSIKGIFVPIFEGLLAENNVYVVTNFAVTLNTIKFKPTRHEFRINFKRDTIVRLVQDSSVPLNGFNFILFKKIHAEYKKDGYLVDVIGQLASKGNLVEFTRDGKPSSYITIELDDLESGQKLRVTWWQTLAFNLLKYLEEHPCLTYVVILQMGKIKFYSGAMGVSNINYNSKLFINVEFSAARISLQVYKTIAEIKKHNQDAVFVTAGTIKEVETEFDWWYKGCKKCRRGLRELEKRYFCPIALKTTGSMCQVLNGYDDSMLDVDMEDNFIPSSETLDGM 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02567 374 SUPERFAMILY Nucleic acid-binding proteins 159 285 IPR012340 -
Aip09g02567 374 Gene3D - 153 293 IPR012340 -
Aip09g02567 374 PANTHER REPLICATION FACTOR A 1, RFA1 55 322 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip09g02567 374 Gene3D - 45 152 IPR012340 -
Aip09g02567 374 SUPERFAMILY Nucleic acid-binding proteins 283 335 IPR012340 -
Aip09g02567 374 CDD RPA1_DBD_A_like 58 146 - -
Aip09g02567 374 Pfam Domain of unknown function DUF223 82 168 IPR003871 -
Aip09g02567 374 SUPERFAMILY Nucleic acid-binding proteins 52 151 IPR012340 -
Aip09g02567 374 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 55 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02567 Aip-Chr9 121581319 121585452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02567 33 276 Core DNA Replication Machinery Family AT2G06510 25.197 5.07e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02567 - - aip:107615923 656.366