Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02564 ATGTTGCAGGATGTGTTTGATCAGCCACTGCCACCAAAGGTGGAGCAACAACTCCCCATTGATGAAATTTCAAGCCCAATCAGTGCTAGACTTTTTGAGCTATGTGACTCTGATTTGTTCCCAGAAGCACTTCAAAACTCTGAGGTTACTTCAAGCTCAAATTGTTGCTATGAAGAGAACTCCTCATATGCAACAAACATGTCTCTAGCATTAGAAGTAGAAACCAAGTTCAATAATAATAACAATAACAATAATACAAATAGCAATAATAGCAATAACAGTGTCACCACCCCAAGTAGCACCACCACCACCAACAACAACACAACCAACAGTAGTAACCTGTCAATCATCTTTGACTCTCAAGAAGAGCTTGACAATGACATCTCTGCCTCCATAGATTTCTCATCTTCACCTGCAGCTTTCAATGTTCCACCGATGTTCTCAGGCTTCTCACAGTATCCCACTGACACTAGTGCTGTTGCACCTCCTCCTCCTCCTCTCATGGGGGCTCCTCAATTGCCTTCTGTCTTTGAAGAGGATTGCATTTCTTCTGCTGTTCCTTCTTATGTCACTCTCAACCCTTCTTCTCCTTCTTGCTCTTATCTCAACCCTGCTGCCATTCCACCACCTTACATGCCTCCTGCTGGTCCCCTGGCCACCGCCTTGTCGGCCGACCGTGCCGCTTTGTTCACCGGAAGCATGCTTCTTGGCTCTGAGCTTCAGAGACCAGACCTTGAATACCAAGGCGAAAATGGTGGAATTTATTGTACAGATTCAATTCACAGAGTGTTTAACCCTCAAGAGCTTCAGGCACTTAGTACTGAGAGTCAGCAACTAGTGGCTGGAGGTGGGAGTTCTGCCAACTTAACGCCAGAAATCTCAAACTTGGAGGACTCTAGCTTCAAGGTTGGGAAACTCTCTGTCGAGCAAAGAAAAGAAAAGATTCATAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATCAAGTATGCCTGCCGCAAAACTCTGGCAGATAGCCGGCCGCGAGTTCGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGATACTCAGAGACCTGCAAGTAGCAATCATGAGGAAGAAGATGAAGAAGAAGTAGTTGTGAAAGAAGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGAGTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCTGGATTTGA 1230 0.4423 MLQDVFDQPLPPKVEQQLPIDEISSPISARLFELCDSDLFPEALQNSEVTSSSNCCYEENSSYATNMSLALEVETKFNNNNNNNNTNSNNSNNSVTTPSSTTTTNNNTTNSSNLSIIFDSQEELDNDISASIDFSSSPAAFNVPPMFSGFSQYPTDTSAVAPPPPPLMGAPQLPSVFEEDCISSAVPSYVTLNPSSPSCSYLNPAAIPPPYMPPAGPLATALSADRAALFTGSMLLGSELQRPDLEYQGENGGIYCTDSIHRVFNPQELQALSTESQQLVAGGGSSANLTPEISNLEDSSFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDTQRPASSNHEEEDEEEVVVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02564 409 Pfam CCT motif 311 353 IPR010402 GO:0005515
Aip09g02564 409 ProSiteProfiles CCT domain profile. 311 353 IPR010402 GO:0005515
Aip09g02564 409 MobiDBLite consensus disorder prediction 77 112 - -
Aip09g02564 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 20 409 - -
Aip09g02564 409 MobiDBLite consensus disorder prediction 346 368 - -
Aip09g02564 409 PANTHER CCT MOTIF FAMILY PROTEIN 20 409 - -
Aip09g02564 409 MobiDBLite consensus disorder prediction 346 378 - -
Aip09g02564 409 Coils Coil 409 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02564 Aip-Chr9 121488706 121494161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02564 283 355 C2C2-CO-like Transcription Factor Family AT5G24930 38.462 5.57e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip09g02564 CCT 5.3e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02564 - - gmx:100803778 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g02564 09 121488706 121494161 Aip09g02564 09 121488706 121494161 ECH