Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02553 ATGGATTCGGATCAGGGGAAGCTATTCATCGGAGGGATTTCGTGGGACACCAATGAGGACAAGTTGAAGGACCATTTCTGCAACTATGGTGACGTCACCAACGCCTCCGTCATGAGGGACAAGAACACCGGCAAGCCCAGAGGCTTCGCCTTTGTTGAATTCGCCGATCCCTCTGTTCTCGATAGGGTCCTCCAAGATAAGCATGTCATTGATGGCAGAACGGTTGATGCTAAGAGGGCCTTATCAAGAGAGGATCAACAAGTTTCTGTCACTTCAAGAGGTGGAAATTCTCATTCTGGTTGGAATTCTGGTGGAAATGGTGGAAACACGAGGACCAAGAAGATATTTGTTGGAGGGTTGCCTCCCACACTGACAGAAGAAAAATTTCGTCAATACTTTGAGTCATATGGTCATGTAACTGATGTAGTAGTTATGTTTGACCAGAATACTGGACGACCACGTGGATTTGGTTTTATTTCATTTGACAATGAGGAGGCAGTTGATAGGGTTTTGCATAAGACATTTCATGATTTATATGGTAAGCAAGTAGAGGTGAAGCGTGCACTTCCTAAAGATGCCAATCCTGGTTCAACTGGCCGTGGTGGAGGTGGTGGCGCAGGAGGGTATCAAGGGTATGGATCATCTGGTGGCAGCCAGAATGCTTATGATGGTCGTATGGATTCTAGTAGGTATATTCAGCCTCCAAGTGCTGCTGGGGGATTCCCAACTTATGGTTCTGCTGGCTATAGTGCACCTGGGTATGGTTATGGTCCAGCCAATAATGGCATTGGCTACGGTGCATATGGAAGTTATGGTGGTGTTGCTGCTGGGTATGGTGGAGCTGGCGGTGCAGCTTATGGGAATCCAAATGTTGCTAATGCTGCTTACACTGGTGGTGCACCTGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTGCTTCTGGCTATGGGTCTATGGGCTATGGGAACACTGCTGCGTGGGGTGCTCCAGGTGGCGTTGCTGGATCTGGCGGCAGTGGTCCTGGTTCAGCAACTGCAGGTCAATCTCCTGGCGGAGCTGCTGGCTACGGGAATCAAGGATATGGATATGGTGGGTATGGTAGTGATAGTTCTTATGGGAATCCCAGCGGATATGGTGCTGTTGGAGGGCGTACTGGGGGTACCCCAAATAGTAATTCTAGCAATGCTGGTGGGAATGAACTACAAGGTAGTGGTGGCAGTGGGAGCTATATGGGAAGTGGTTATGGGGATGCAAATGGACATTCAGGTTATGGAAATGCTGGTTGGAGATCTGAACAAACTCAACGGTCTGGAAACTATGGGACTCCTCAGGGAAATGGCTCTCATGGTGGGCAAGTTGGTTATGGTGGTGGGTATGCTGGTGCTCAGTCACGACAAGCTCAACAACAGTAA 1413 0.4933 MDSDQGKLFIGGISWDTNEDKLKDHFCNYGDVTNASVMRDKNTGKPRGFAFVEFADPSVLDRVLQDKHVIDGRTVDAKRALSREDQQVSVTSRGGNSHSGWNSGGNGGNTRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMFDQNTGRPRGFGFISFDNEEAVDRVLHKTFHDLYGKQVEVKRALPKDANPGSTGRGGGGGAGGYQGYGSSGGSQNAYDGRMDSSRYIQPPSAAGGFPTYGSAGYSAPGYGYGPANNGIGYGAYGSYGGVAAGYGGAGGAAYGNPNVANAAYTGGAPGGPRSSWPAQAASGYGSMGYGNTAAWGAPGGVAGSGGSGPGSATAGQSPGGAAGYGNQGYGYGGYGSDSSYGNPSGYGAVGGRTGGTPNSNSSNAGGNELQGSGGSGSYMGSGYGDANGHSGYGNAGWRSEQTQRSGNYGTPQGNGSHGGQVGYGGGYAGAQSRQAQQQ 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02553 470 MobiDBLite consensus disorder prediction 84 110 - -
Aip09g02553 470 SMART rrm1_1 7 78 IPR000504 GO:0003723
Aip09g02553 470 SMART rrm1_1 114 186 IPR000504 GO:0003723
Aip09g02553 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 172 IPR000504 GO:0003723
Aip09g02553 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Aip09g02553 470 Gene3D - 108 227 IPR012677 -
Aip09g02553 470 MobiDBLite consensus disorder prediction 189 229 - -
Aip09g02553 470 MobiDBLite consensus disorder prediction 80 112 - -
Aip09g02553 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Aip09g02553 470 MobiDBLite consensus disorder prediction 377 470 - -
Aip09g02553 470 Gene3D - 4 88 IPR012677 -
Aip09g02553 470 MobiDBLite consensus disorder prediction 385 409 - -
Aip09g02553 470 MobiDBLite consensus disorder prediction 212 226 - -
Aip09g02553 470 CDD RRM2_DAZAP1 111 190 IPR034131 GO:0003723
Aip09g02553 470 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Aip09g02553 470 MobiDBLite consensus disorder prediction 426 449 - -
Aip09g02553 470 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 468 - -
Aip09g02553 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Aip09g02553 470 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Aip09g02553 470 SUPERFAMILY RNA-binding domain, RBD 112 218 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02553 Aip-Chr9 121126226 121130082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02553 8 185 Eukaryotic Initiation Factors Gene Family AT2G23350 21.809 5.45e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02553 K14411 - gmx:100786882 540.421