Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02518 ATGACAACTGCCATGGATATGGTTAATAAGATTAATCCTGAGAAGGAAGCATGGAACCTCAAAGTTAGGGTGATTAGGCTTTGGACTGTTCCGACTTTCACTGGTCAGCTTCTCCCAAATTCCATGGAGATGATTTTGGTTGATGAATCTGGGTGCAAGATACAAGCTACTGTTCGGAAGACTATGATTTACAGGTTCAAACAACTTCTCTCCGAGATGGTCGAGTATATGACCACTGTCAGGGATGTTATCTGTGATTTTATTCCAAAATCTGCTCTTACAATCTCTCCATTCACTGAACTTTTGAAAACCAAAGAGGATTCTGATTTCTTAGTTGATGTTGTGGGTCTGTTGGTCTCTGTGTCAGAAGAGAAAGAATATGATAAAGATGGAAAGAAGATGAAGATGGCTATGATGGAACTTGCTGAAAATGATCACAGGATTCAGTGTGCCTTATTTGGTGAATATGTTGATGAACTTAATCGATTTCTGTCTTCTGGGTATGCTGAACAGCCAGTTGTGGTTTTACAACTTGCCAAAGTTAAGGTTTTTAGAGGTAGAGTTAAACTTCAGAATGTTATGTTTGCATCAAAGCTTGGATTTAATCTTGACATCCCAGAGGTGGCAGCTTTTCAGAAAAGTGCATCCCAACCCATTGGCATTGTTGGATCTGGAAAAAATATCAGAATAGAAGAAGACTTTATGAAGCTCACACCTAGGTGTACTGTGAAGTCGCTTGATGATAACAACTGGGCTGGAACTTTTGTTGTACTAGCGAAGATAGCTGAAATAGTTGAGGATAGTCCTTGGTGGTGCTCTGCTTGTGTGTGTGGCAGAGGTGTTCAAGTAGAATCTGGGATTTACTTTTGTCAATTTTGTAACATCCATGTTACAAATGTGACTCCTAGGTTTAAAGTGAAGGTGTTGGTTGAGGATTCCACTGGTATTTCTATTTTTGTCCTCTTTGATTGTGAGGCAAGTTACCTACTGAATAAGACTTGTGCCCAGCTGTTTGAACAACATCTTAAGGATATTGATGTTGTGTTTGGCACACAGTCTCCTATATTCCAAGAAATTGTTGGAAAAACTATGCTGTTCAAGGTTCTTAGTAGGCCTGTTGGGATGGAGAAATTCAAAGGGACCTATCCAGTGAGGCGTGTTTGTGATGATGCTGCAATAGTTGGAATGTTTGAGCTCTCTGGTTCAGATTTGAGTCCTGAAAATGTTGGGTTTATACCAAAAGGAGAAGGATCATTTGGGAAACCCTCTAAGGTTACCAAATCACCGAATTTAGGATTGACTCCTTCCAGCTGCTCTAAGCTCTTTGCTGGTTTGCCTCAATGTATCCAAAAGGAATCAAGTGTTGTTGACTTGGGAGACGATGAAGATGCTAAGTGTCCTCTCCTCAAGAGAAAGTCTGCTGATGCTGTGGTGGATAAGTTAAATGAAGTGGATAGTTCTGAAAATTCATGTGATAAAGTTGATGAAAGTGAAGAGGAGTATGTGGTTGGCGTTAATCGAGGCTCTGTTGATGCTGAGAAAGATGTGAAGCCTTCGTTGAAGAGGTTGAGAAGATCTTTGAGGCTGCAATTTGATGAAGCTAATGAGTCTTGTGGCTCTGGGAATGACGGCTCCTCTGGACATAGGGTTAATTGA 1656 0.4064 MTTAMDMVNKINPEKEAWNLKVRVIRLWTVPTFTGQLLPNSMEMILVDESGCKIQATVRKTMIYRFKQLLSEMVEYMTTVRDVICDFIPKSALTISPFTELLKTKEDSDFLVDVVGLLVSVSEEKEYDKDGKKMKMAMMELAENDHRIQCALFGEYVDELNRFLSSGYAEQPVVVLQLAKVKVFRGRVKLQNVMFASKLGFNLDIPEVAAFQKSASQPIGIVGSGKNIRIEEDFMKLTPRCTVKSLDDNNWAGTFVVLAKIAEIVEDSPWWCSACVCGRGVQVESGIYFCQFCNIHVTNVTPRFKVKVLVEDSTGISIFVLFDCEASYLLNKTCAQLFEQHLKDIDVVFGTQSPIFQEIVGKTMLFKVLSRPVGMEKFKGTYPVRRVCDDAAIVGMFELSGSDLSPENVGFIPKGEGSFGKPSKVTKSPNLGLTPSSCSKLFAGLPQCIQKESSVVDLGDDEDAKCPLLKRKSADAVVDKLNEVDSSENSCDKVDESEEEYVVGVNRGSVDAEKDVKPSLKRLRRSLRLQFDEANESCGSGNDGSSGHRVN 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02518 551 CDD RPA1_DBD_B_like 113 214 - -
Aip09g02518 551 CDD RPA1_DBD_A_like 20 72 - -
Aip09g02518 551 CDD RPA1_DBD_C 255 387 IPR013955 -
Aip09g02518 551 Gene3D - 229 394 IPR012340 -
Aip09g02518 551 Gene3D - 4 83 IPR012340 -
Aip09g02518 551 Pfam Replication factor-A C terminal domain 255 368 IPR013955 -
Aip09g02518 551 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 338 - -
Aip09g02518 551 PANTHER REPLICATION FACTOR A 1, RFA1 22 338 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip09g02518 551 SUPERFAMILY Nucleic acid-binding proteins 238 371 IPR012340 -
Aip09g02518 551 Gene3D - 88 219 IPR012340 -
Aip09g02518 551 SUPERFAMILY Nucleic acid-binding proteins 97 216 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02518 Aip-Chr9 119794628 119797801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02518 1 337 Core DNA Replication Machinery Family AT5G08020 23.316 5.80e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02518 - - aip:107607298 806.208