Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02513 ATGTTAAAAGCAGTGGCATCTTGGTTCTTGTTGATTTGCTCACTCCTCTTATGGGTAACTGTATCTGCAACAACAACAGATAATGGATTTCCAAGATGCAACTGTGATGATGAATCTAGCTTGTGGACTATTGAGAGCATTCTAGAATGCCAGAGAGTTGGGGATTTCTTGATTGCTGTGGCATACTTCTCAATCCCCATTGAGCTTCTTTACTTCATAAGTTGCACAAATGTTCCTTTCAAATGGGTGCTTATACAGTTCATTGCCTTCATTGTTCTTTGTGGATTGACGCATTTGTTGAATGGGTGGACTTATGGCCCTCACACTTTTCAGCTCATGGTGGCGCTCACCGTCTTCAAGATTCTCACAGCGTTGGTGTCGTGTGCCACGGCAATTACACTTGTCACGCTGATCCCTATGCTTCTTAAGGTGAAGGTCAGGGAGTTCATGCTGAAGAAAAAGACGTGGGATCTTGGACGGGAGGTTGGTCTTATAATGAAGCAAAAGGAGGCTGCAAGCCATGTGAGGATGCTCACTCAGGAGATTCGAAAGTCGCTTGATAGGCATACGATTCTATATACCACTTTGGTGGAGCTTTCTAAGACACTCGGATTGCAGACTTGTGCTGTGTGGATGCCTAATGTTGAGAAAACAGAGATGAACCTTACTCATGAATTAAATAGGAGGAATTTTAATTTTACTATACCAATTACTGATCCGGACGTTGTAAAGATTAAAGGAAGTGATGGAGTGAATATACTTGGCCCTGACTCAGCACTTGCTGGTGCAAGTAGTGGTGTAAATGGCGAGATTGGACCGGTTGCTGCAATCCGCATGCCAATGTTGCGAGTTTGTAATTTCAAAGGAGGAACACCGGAGTTAACGCAGGCATGTTATGCAATATTGGTATTGATTCTTCCGAGTGGAGAGACTAGATCTTGGAGCAATCAAGAGCTGGAGATAATTAAGGTGGTTGCTGATCAGGTTGCAGTGGCTTTATCTCATGCTGCAATTCTGGAAGAGTCTCAGCTCATGAGAGAGAAATTGGAGGAACAAAATCGCGCTTTGCAACAGGCGAAAAGGGATGCTATGATGGCGAGCCAGGCAAGAAGCTCATTTCAGAAAGTCATGAGTGATGGGATGAGGAGGCCTATGCACTCGATTTTGGGATTGCTTTCAATGGTGCAAGACGATAATTTGAAGAGCGAACAGAAACTTATCGTGGATGCAATGCTAAGGACGAGCAATGTCTTATCGAACTTGATAAATGATGCCATGGACAATTCGGCAAAGGATGATGGGAGATTCTCTTTGGAGATAAGGTCTTTCAGATTACATTCGATGATAAAGGAAGCGGCTTGCCTTGCCAAGTGCATGTGTGTCTATAGAGGATTTGGTTTTCTGGTCGAGGTCGAGAAGTCTTTGCCGGACAATGTAATGGGCGACGAGAGGAGGGTTTTTCAGGTAATTTTGCACATGGTTGGGAACCTTCTGGATCATAGCCAAAGGGAAGGAACTCTCGTACTTAGAGTTTTCGCCGAAACCGGAAGTCAGGGAAGGACTGACAAAGGGTGGACAAGTTGGAGACCAAGCTCATCTAGTGGTGATGTAAATATTAGATTTGAGATAGGGATCAACAGTAGTGATTCAGAAATTGGGAGCTCGTTTTCTTCGGGATTTGGAGTTAGGAAATTTTCTAGTGATAGGGTCGAGGGCCGATTGAGCTTCAGCATTTGCAAAAGGATAGTTCAGCTGATGCAAGGCAACATATGGTTGGTTCCGAATTCTCATGGTTATCCTCAAAGCATGGCCCTCGTTCTTCGGTTTCAATTACGACCATCAATCAGCATAGCCATCTCGGAACCTGGAGAGTTTTCGGAGCGTCATGGTTCCAATTCTCTGTTGAGAGGTCTGCAAGTTCTATTGGCCGACAACGACGATGTAAATAGGGCAGTGACCCAAAAGTTGCTTCAGAAATTAGGCTGCATTGTAGCCACCGTATCCTCCGGATTCGAATGCCTTACTGCCATCGGACCTGCCGGAACTTCTTTCCAAATCATTCTTTTGGATCTTCACATGCCTGACATAGATGGCTTTGAAGTCACCACGAGGATTCGGAAGTTCAGGAGCCGAAACTGGCCGATGATCGTAGCGTTGACCGTGAATATGGGAGATGAGTTGTGGGAGAAGTGCATGCAGATTGGTATCAATGGAGTTATCCAAAAACCAGTTTTGTTGCAAGGAATTGCAAGTGAGCTCAGAAGACTCATAATTCAGGGAAATAATGTCCTGGTTTGTGATGAAAAAAAAGGGAGGGAAGGGAGATCTGAACGGCAGAGGGCATGGAGGAAAGGCGAAGGGAGGTACGACAGTGATACTGGAAACACGAGGAACACGACCACCACCGTCACCACCACCTCATCGATGATGACGAGGAATACAAGGGTGAGGGCCAGACACATCGCAGCGAGGCTAGGGCGCCAGTCATGA 2490 0.455 MLKAVASWFLLICSLLLWVTVSATTTDNGFPRCNCDDESSLWTIESILECQRVGDFLIAVAYFSIPIELLYFISCTNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVFKILTALVSCATAITLVTLIPMLLKVKVREFMLKKKTWDLGREVGLIMKQKEAASHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQTCAVWMPNVEKTEMNLTHELNRRNFNFTIPITDPDVVKIKGSDGVNILGPDSALAGASSGVNGEIGPVAAIRMPMLRVCNFKGGTPELTQACYAILVLILPSGETRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQQAKRDAMMASQARSSFQKVMSDGMRRPMHSILGLLSMVQDDNLKSEQKLIVDAMLRTSNVLSNLINDAMDNSAKDDGRFSLEIRSFRLHSMIKEAACLAKCMCVYRGFGFLVEVEKSLPDNVMGDERRVFQVILHMVGNLLDHSQREGTLVLRVFAETGSQGRTDKGWTSWRPSSSSGDVNIRFEIGINSSDSEIGSSFSSGFGVRKFSSDRVEGRLSFSICKRIVQLMQGNIWLVPNSHGYPQSMALVLRFQLRPSISIAISEPGEFSERHGSNSLLRGLQVLLADNDDVNRAVTQKLLQKLGCIVATVSSGFECLTAIGPAGTSFQIILLDLHMPDIDGFEVTTRIRKFRSRNWPMIVALTVNMGDELWEKCMQIGINGVIQKPVLLQGIASELRRLIIQGNNVLVCDEKKGREGRSERQRAWRKGEGRYDSDTGNTRNTTTTVTTTSSMMTRNTRVRARHIAARLGRQS 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02513 829 SUPERFAMILY CheY-like 636 756 IPR011006 -
Aip09g02513 829 SUPERFAMILY GAF domain-like 190 336 - -
Aip09g02513 829 Gene3D - 433 610 IPR036890 -
Aip09g02513 829 Gene3D - 165 334 IPR029016 -
Aip09g02513 829 CDD REC_ETR-like 638 753 - -
Aip09g02513 829 PIRSF Ethylen_sen_hybr_HK 1 764 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Aip09g02513 829 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 438 595 IPR036890 -
Aip09g02513 829 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 481 596 IPR003594 -
Aip09g02513 829 SMART gaf_1 187 343 IPR003018 GO:0005515
Aip09g02513 829 ProSiteProfiles Response regulatory domain profile. 639 757 IPR001789 GO:0000160
Aip09g02513 829 SMART HisKA_10 369 434 IPR003661 GO:0000155|GO:0007165
Aip09g02513 829 CDD HisKA 367 429 IPR003661 GO:0000155|GO:0007165
Aip09g02513 829 Pfam Response regulator receiver domain 640 747 IPR001789 GO:0000160
Aip09g02513 829 Coils Coil 339 369 - -
Aip09g02513 829 Gene3D - 638 829 - -
Aip09g02513 829 MobiDBLite consensus disorder prediction 774 791 - -
Aip09g02513 829 Gene3D - 335 432 - -
Aip09g02513 829 PANTHER ETHYLENE RESPONSE SENSOR 2 16 761 - -
Aip09g02513 829 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 16 761 - -
Aip09g02513 829 SMART HKATPase_4 481 617 IPR003594 -
Aip09g02513 829 MobiDBLite consensus disorder prediction 774 800 - -
Aip09g02513 829 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 354 434 IPR036097 GO:0000155|GO:0007165
Aip09g02513 829 ProSiteProfiles Histidine kinase domain profile. 376 613 IPR005467 -
Aip09g02513 829 SMART REC_2 638 757 IPR001789 GO:0000160
Aip09g02513 829 CDD HATPase_ETR2_ERS2-EIN4-like 475 607 - -
Aip09g02513 829 Pfam GAF domain 187 333 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02513 Aip-Chr9 119610108 119615147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02513 27 755 Miscellaneous Gene Families AT3G04580 57.895 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip09g02513 GAF 7.3e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02513 K14509 - gmx:100787425 1264.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g02513 09 119610108 119615147 Aip09g02513 09 119610108 119615147 ECH