Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02487 ATGGATTTCGATTCCCTCGACGATTTCTTCGATTTCGATGATTTTATCCATCATTCTCCCCATCCGCCTTCCGATTTCCTGTGGTCCAATCCAAGTGTGAGCTCTGAAATTGGCTTTTCAGCAGGTGGTGGTGGTGGTGGTAGTGATGTCTGTCAAGAGAAAACCAGAAAGAGGAGACATGCTAGTTCATGTTGCAAGGCAGGGACAAAGGCTGGCCGTGAAAAGTTGCGAAGGGAGAGACTCAATGAAAGGTTCTGTGACTTAAGTGCTGTTTTGGAACCTGGGAGACCTGCGAAAGCTGATAAAATGGCTATACTTGATGATGCTATCAGAGTTTTGAAACAACTAAAAACTGAAGCTGAGGAACTCAAACAAACGAATGAAAAATTGTTAGAAGAAATAAAATGTTCTAAGGCCGAGAAAAATGAACTTCGAGAAGAGAAACTTGTTCTGAAAGCAGATAAAGAAAGGATTGAGAGACAGTTGAAAGATTTGCCTGTTCAACCTGCAGGGTATATGCCTCCCAATCTAGCTCCTTTCCAAGCAGGGGTCAACAAAGTCGCTGTTTATCCGAACTACGGTTATATGCCAATGTGGCATTATCTTCCTCCATCTACCCGTGATACATCCCATGATCATGAGCTTAGGCCTCCTGCTGCATAA 663 0.4344 MDFDSLDDFFDFDDFIHHSPHPPSDFLWSNPSVSSEIGFSAGGGGGGSDVCQEKTRKRRHASSCCKAGTKAGREKLRRERLNERFCDLSAVLEPGRPAKADKMAILDDAIRVLKQLKTEAEELKQTNEKLLEEIKCSKAEKNELREEKLVLKADKERIERQLKDLPVQPAGYMPPNLAPFQAGVNKVAVYPNYGYMPMWHYLPPSTRDTSHDHELRPPAA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02487 220 PANTHER TRANSCRIPTION FACTOR BHLH104 9 220 - -
Aip09g02487 220 CDD bHLH_AtILR3_like 70 145 - -
Aip09g02487 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 116 IPR011598 GO:0046983
Aip09g02487 220 Pfam Helix-loop-helix DNA-binding domain 69 117 IPR011598 GO:0046983
Aip09g02487 220 Gene3D - 69 149 IPR036638 GO:0046983
Aip09g02487 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 141 IPR036638 GO:0046983
Aip09g02487 220 SMART finulus 71 122 IPR011598 GO:0046983
Aip09g02487 220 PANTHER BHLH TRANSCRIPTION FACTOR 9 220 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Aip09g02487 220 Coils Coil 106 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02487 Aip-Chr9 118200944 118203615 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02487 39 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 61.702 6.40e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip09g02487 HLH 3.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02487 - - aip:107617845 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g02487 09 118200944 118203615 Aip09g02487 09 118200944 118203615 ECH