Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02481 ATGCTTCCTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGAAAAAATTCAAGCTACAGTCAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGACAAGTTTATAGAATGGCATATTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGTCGGAGAAGAGAAAGAATATGCAAAAGAGGAGAAAATTGTGAAAATGATTGCATTGGAATTAACTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGGGATTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGCTATGTGGAGCAGCCTGTTGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGTCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATATTCCTGAAGTTGTTGAATTCAGGCGAGGTGTCAATGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTCTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACAATTGAAGAGCTTCAAGATAACAATCAGGAGGGTTCTTTTATCATTTTTGGTGCAATCCAAGGTATTGTTGAGGATGGAAGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTCACTCCAAGGAGAATTTGTGATGATTCCACCATTATTGCGATGTTTGAACTTCCCAATTATGATGCTGATGATGAGTCTACTCTAAAAAAGGAGCATGATTTACATAAATCTGTTCCTTGTGGAAAAGCGGATGTTGGTATTAAGAAGGAGTCTTCGGATAGTTTTATCAAAAGTGAGAAAGATGCTGAAGAGAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTGGATATATTGCTTAGCTCAGCAGAAAAAGAAACTCAGGAGGTGTTGTCCCATGTTCTTGAAGCACCTTCGCAATATGGAGAGAAGCTTACCCATGAAAATCATGTTGTCACCTCTAAGGGTAAGAGGAATTTGAATCCTCAATTTGAAGTGGCTGCTGTTGATGCAGATGGGCGTGGGTTCAAGGTTGCCAAGGTTAATGGAGTTTGA 1410 0.3865 MLPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHEVPNSMEMILLDEHCEKIQATVKKPLLNRFRDHIVEGQVYRMAYFTVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFPFSELLNMTQDYDFLVVGEEKEYAKEEKIVKMIALELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDIPEVVEFRRGVNGTQPLFIANEGKVLSLEDDFMRLTRKCTIEELQDNNQEGSFIIFGAIQGIVEDGSWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRRICDDSTIIAMFELPNYDADDESTLKKEHDLHKSVPCGKADVGIKKESSDSFIKSEKDAEEKTPSNDTVSDDLSAELDILLSSAEKETQEVLSHVLEAPSQYGEKLTHENHVVTSKGKRNLNPQFEVAAVDADGRGFKVAKVNGV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02481 469 Gene3D - 253 335 IPR012340 -
Aip09g02481 469 CDD RPA1_DBD_B_like 164 232 - -
Aip09g02481 469 Pfam Domain of unknown function DUF223 43 134 IPR003871 -
Aip09g02481 469 Gene3D - 114 238 IPR012340 -
Aip09g02481 469 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 326 - -
Aip09g02481 469 SUPERFAMILY Nucleic acid-binding proteins 4 112 IPR012340 -
Aip09g02481 469 CDD RPA1_DBD_A_like 19 107 - -
Aip09g02481 469 SUPERFAMILY Nucleic acid-binding proteins 261 325 IPR012340 -
Aip09g02481 469 PANTHER REPLICATION FACTOR A 1, RFA1 22 326 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip09g02481 469 Gene3D - 4 112 IPR012340 -
Aip09g02481 469 SUPERFAMILY Nucleic acid-binding proteins 120 234 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02481 Aip-Chr9 117891447 117894337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02481 8 314 Core DNA Replication Machinery Family AT2G06510 23.512 2.99e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02481 - - adu:110280586 709.138