Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02476 ATGTCCCATTTCCGGAAATTCCAATTAACACACTTCATCTCCAAAATTTCCCATACTTGCCTTAAACCTTCACAAAACCCTAGATTCCACAGCGCCAAATCTGCACCCCAATCCGCACAAAAAAACTGTGATTTCAAGTTCCCCTCGAAGGTCAGAAGGGAAGCACAAGCCGCATTGCTCGAGTACCTTCATTCCACAAGGAGCTTGCAGTTCCTTGACGCAGACAACATGTGCAAAAACTCGCCCTTTTTCCTCGACGATATTCTGAGGAAGGTTCTTCAGAAGAACGACACTGCTGCCAGCGACGTCAAGAAATCGATCTCGCGTTACCTCCGTTACCATCCAATTAACGAGTTTGAACCATTCTTTGAGAGTACAGGTTTGAAGCCTTTTGAATACTTGCACCTTCTTCCAAGGGACATGATGTTCATCAACGATGACACTGTGTTGATGGAGAATTACCATACTCTGTGTAACTATGGTGTTCCCAGGAACAAAATGGGGAAGATCTTCAAGGATTCACCTCAAGTTTTTCGATATGAAAGTGGGGTTCTGGTGTCCAAGTTTCAGAATTATGAAGAGCTTGGTGTTGCTTCTTCAACTTTGGTAAAGGTGATTTCTTTGAACCCTAGGGTTTTGGTTGGGGATGTTAACCTTTATCTTGTGAAGGTTTTGAAGAAGTTAAACCATCTTGTTGGTGAAGAAAAGGGTAGTACTTGGATTGAGGAGCAGTTGTTGGATGAGAGTAGCTGTAATTTTGGGGTTATGCATGAGCTCTTGTGCTTGCTTGAGAAGGTTTACAGTGACGAGAAATTGTTGGGTGAGATGATTGGCCAGCACCCTTTTGTTGTTTTTGAGGATTCTGGAGTTTGGGCATTGTCCCTCATTGGGTTCTTGGTGAAATTAGGGTTGTCCTTGGACCAGATAGCTATAATTTTTGTCGAGTTTCCGCAAATTGGGGTGTTGATGTTTCTGTCGAATTTGCACAAGTGTTTTACGTTCCTGTCTGATATCGATATGCATGCTGCAGAGATTGGGAAGATTTTCCAGTCTCATTCCTTGCTGATGGGTTCATTCACTATTAAGAAAAGTAGTAGTTTGCTCAGTAGCTTGAATGTTGGCAAGAAAAGGCTCTGTAAGTTAGTGCAGGATAATCCAGAAGGGATGCAGAATTGGGCTGTGGGGAAGAAAATTCAGCCTTATCCTGAGGATAAGGAAACAAGGGCTCTGAAAACAGAGTTCTTGAAAACAAAGTTCTTGTTGAGCCTTGGATACGAAGAGAACTCGGGGGGAATAAAACAGGCTTTTAAGCTGTTCAGAGGTAAGGGAGATGAGCTTCAGGAGAGATTTGATTTTATTGTTAATGCTGGCTTGGATGTTAAGGATGTTCGCGAAATGATTAAGGCTTCACCTCAGATTCTTAATCAGACCACAGATATGATCAACACGAAAATTGAGTATCTTGTGAATGAAGGATATCCTATATCAAGTTTAGTCAATTTCCCATCTTTTCTCTCCTATACACTTTGTAGAGTTAAGCTTAGGTTATCAATGTATAATTGGCTTAGAGACCATAGAGTTGTTCACCCCAGGCTTGCTTTGAGCACTATAGTTGCATGCTCAGAGGAATTATTCTTACGGTTGTATGTAAATCAGCATCCATCTGGCTTTCAAGTTTGGCAAGATTTGAAGTCTGAAATTTATTCTGAGAGATAA 1716 0.4155 MSHFRKFQLTHFISKISHTCLKPSQNPRFHSAKSAPQSAQKNCDFKFPSKVRREAQAALLEYLHSTRSLQFLDADNMCKNSPFFLDDILRKVLQKNDTAASDVKKSISRYLRYHPINEFEPFFESTGLKPFEYLHLLPRDMMFINDDTVLMENYHTLCNYGVPRNKMGKIFKDSPQVFRYESGVLVSKFQNYEELGVASSTLVKVISLNPRVLVGDVNLYLVKVLKKLNHLVGEEKGSTWIEEQLLDESSCNFGVMHELLCLLEKVYSDEKLLGEMIGQHPFVVFEDSGVWALSLIGFLVKLGLSLDQIAIIFVEFPQIGVLMFLSNLHKCFTFLSDIDMHAAEIGKIFQSHSLLMGSFTIKKSSSLLSSLNVGKKRLCKLVQDNPEGMQNWAVGKKIQPYPEDKETRALKTEFLKTKFLLSLGYEENSGGIKQAFKLFRGKGDELQERFDFIVNAGLDVKDVREMIKASPQILNQTTDMINTKIEYLVNEGYPISSLVNFPSFLSYTLCRVKLRLSMYNWLRDHRVVHPRLALSTIVACSEELFLRLYVNQHPSGFQVWQDLKSEIYSER 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02476 571 PANTHER MITOCHODRIAL TRANSCRIPTION TERMINATION FACTOR-RELATED 38 564 - -
Aip09g02476 571 Pfam mTERF 157 319 IPR003690 GO:0003690|GO:0006355
Aip09g02476 571 Pfam mTERF 411 545 IPR003690 GO:0003690|GO:0006355
Aip09g02476 571 Pfam mTERF 263 476 IPR003690 GO:0003690|GO:0006355
Aip09g02476 571 Gene3D Transcription termination factor 3, mitochondrial 60 288 IPR038538 -
Aip09g02476 571 Gene3D Transcription termination factor 3, mitochondrial 290 563 IPR038538 -
Aip09g02476 571 PANTHER CGI-12 PROTEIN-RELATED 38 564 IPR003690 GO:0003690|GO:0006355
Aip09g02476 571 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Aip09g02476 571 SMART mt_12 168 198 IPR003690 GO:0003690|GO:0006355
Aip09g02476 571 SMART mt_12 464 494 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02476 Aip-Chr9 117734582 117738796 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip09g02476 mTERF 7.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02476 - - lja:Lj1g3v4317450.1 628.246