Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02475 ATGAATGAAGATGGATCAAAGGGTAGGACAAAGGATGACGGCGGAGATATCCGATATAGAGGCGTACGCCGCCGTCCTTGGGGGAAGTTTGCGGCCGAGATTCGTGACTCCACTAGGCAGGGTCAGAGGGTTTGGCTTGGGACATTCAACACGGCTGAGGAAGCAGCTAGGGCTTATGATAGAGCCGCTTATGCCATGAGAGGTGCATTTGCTATCCTTAACTTCCCAAATGAGTATCCTATGTCATCAGGTTATGGTAATAACCGCACCGGTGGCGGTGGCAGTGGCTCCTCTTATTCCTCCGGCGCTTCAACTTCCTCTGCTTCATGGCAGGGCAATGTGGAAGGCAGGGGAAGGAGTGAAGTCTTTGAGTTTGAGTACTTGGATGACAAATTGTTGGAGGAGCTTCTT 411 0.5134 MNEDGSKGRTKDDGGDIRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYAMRGAFAILNFPNEYPMSSGYGNNRTGGGGSGSSYSSGASTSSASWQGNVEGRGRSEVFEFEYLDDKLLEELL 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02475 137 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Aip09g02475 137 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Aip09g02475 137 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Aip09g02475 137 MobiDBLite consensus disorder prediction 82 113 - -
Aip09g02475 137 MobiDBLite consensus disorder prediction 1 20 - -
Aip09g02475 137 PANTHER - 12 137 - -
Aip09g02475 137 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Aip09g02475 137 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Aip09g02475 137 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Aip09g02475 137 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Aip09g02475 137 PANTHER DNA-BINDING DOMAIN 12 137 IPR044808 GO:0003700|GO:0009873
Aip09g02475 137 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02475 Aip-Chr9 117652764 117653174 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02475 13 137 AP2-EREBP Transcription Factor Family AT3G23230 61.111 1.51e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip09g02475 AP2 4.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02475 - - aip:107615822 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g02475 09 117652764 117653174 Aip09g02475 09 117652764 117653174 ECH