Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02440 ATGGCATCGTCACCTCTGTCCGGGGCTCGCTGCACTTCGTCGTGTCTGTGTCGTCACGGTGCTTGGTCTCCCTCTTCTCTTCGTCTACGTTCTCAGGATTTAGGTGGAAGACTATTGATTGTTAACAAGGCTTTTCCAGGAGGAGAGCGACCTGAATGCCCACCCCGTTCATTCGAACAGGCTTTTAGAATCTATGTTGGTAACTTGTCTTGGGATGTTGACAATGGTTGCCTAGAGCAGATTTTCAGCGAATACGGTAAGGTTGTGAATGCCCGCGCAGCATATGACAGAAAGATTGAACAATCATGCGGCTTTGGTTTTGTCACAATAACCGATGATATTGAAATGAACGACGCAATTGCTGCTCTTGATGGCCAGAGTTTGGATGGAAGGGAAATAAGAGTGAATGTTGCTGAGGACATACCCAAACGCTCTTTTTGA 441 0.4694 MASSPLSGARCTSSCLCRHGAWSPSSLRLRSQDLGGRLLIVNKAFPGGERPECPPRSFEQAFRIYVGNLSWDVDNGCLEQIFSEYGKVVNARAAYDRKIEQSCGFGFVTITDDIEMNDAIAALDGQSLDGREIRVNVAEDIPKRSF 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02440 146 SUPERFAMILY RNA-binding domain, RBD 54 143 IPR035979 GO:0003676
Aip09g02440 146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Aip09g02440 146 Gene3D - 48 145 IPR012677 -
Aip09g02440 146 PANTHER RIBONUCLEOPROTEIN 31 145 - -
Aip09g02440 146 SMART rrm1_1 63 136 IPR000504 GO:0003723
Aip09g02440 146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 134 IPR000504 GO:0003723
Aip09g02440 146 PANTHER OS02G0815200 PROTEIN 31 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02440 Aip-Chr9 116108934 116111493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02440 34 139 Eukaryotic Initiation Factors Gene Family AT3G16380 34.783 1.64e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02440 - - ahf:112778713 235.343