Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02381 ATGCTGGATCAGTTGGTTGATCTTGGAGTTAAGGAAAATAAGTTAGACAGGGTAATTGCTAGAAGCCCGCAGCTACTATTGCGGAAGTCCAAAAATTTTTTACAAGTTGTTCTGTCTTTTGAAAATATGGGCTTGGATAGAGAAACTATTAGGAGAATTCTTTCTCATTGCCCAAAAATTTTTGCTGCCATCATTGATAAAACTCTTCAAAGGAAGATTGAATTCCTTTCTGAGGTTGGTGTTTCTAAAGCTTATCTTCCTGGAGTAATAAGAAAATATACGGAATTACTTGTAACCGACACTGATAAAACTATACTGCATCCAAAATGTTTTGGTTCACTAAAAGAAGCGGGTGCCGCAGTAGCTGCCGAATCTTCTACTGGTACATGGACAACTATTTTGACCAATGGGCTTACCAGTCTTGATCATTACAAAGGACGATGCTACAATATTAAGCCGGTTGCTGGCGAAGAAAATCAATATATTACCTATGTAGCTTATTCTTTAGACCTTTTTGAGGAAAGTTCTATTACTAACATGTTTACTTCCATTGTAGGTCCGCCTCATGGCATCCAAGTTGAAAGAGTCACTAGCCCTACTTTCGGCATCCCCTTCCTTACGGTTAAGGTAACAACTTCGGGCATGGCCAACTCCCATAGCGTGACGGGCGGTGTGTACAAGGCCCGAGAACGAATTCACCGTCGTAAGAAATGA 714 0.4048 MLDQLVDLGVKENKLDRVIARSPQLLLRKSKNFLQVVLSFENMGLDRETIRRILSHCPKIFAAIIDKTLQRKIEFLSEVGVSKAYLPGVIRKYTELLVTDTDKTILHPKCFGSLKEAGAAVAAESSTGTWTTILTNGLTSLDHYKGRCYNIKPVAGEENQYITYVAYSLDLFEESSITNMFTSIVGPPHGIQVERVTSPTFGIPFLTVKVTTSGMANSHSVTGGVYKARERIHRRKK 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02381 237 SUPERFAMILY RuBisCO, large subunit, small (N-terminal) domain 108 191 IPR036422 GO:0015977|GO:0016984
Aip09g02381 237 Pfam Ribulose bisphosphate carboxylase large chain, N-terminal domain 107 191 IPR017443 GO:0015977|GO:0016984
Aip09g02381 237 SMART mt_12 87 120 IPR003690 GO:0003690|GO:0006355
Aip09g02381 237 SMART mt_12 51 82 IPR003690 GO:0003690|GO:0006355
Aip09g02381 237 SMART mt_12 16 46 IPR003690 GO:0003690|GO:0006355
Aip09g02381 237 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 113 186 - -
Aip09g02381 237 Pfam mTERF 2 107 IPR003690 GO:0003690|GO:0006355
Aip09g02381 237 AntiFam Antisense to 16S rRNA 196 235 - -
Aip09g02381 237 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE 113 186 IPR033966 -
Aip09g02381 237 Gene3D - 85 198 IPR036422 GO:0015977|GO:0016984
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02381 Aip-Chr9 112765620 112768910 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip09g02381 mTERF 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02381 K01601 K15032 gmx:100802127 153.68