Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02300 ATGGTAGGACTTGAGATCATACCAATAGGCACAATTTTGGCAGTGCTAACCAACCAGGTCTTGAAAACGGCTCATGCAGCGGCCGATGTTCTTATAGGCAAAGAAAGTTTCAAAATCCTCTCAAAACACCTCTTTGATATTGAGCCTGTTCTGAAGGAACTACAGCTTCAAGAGCTCAATGAATCTCAAGCTGCAAGGGCTGCTTTGGAATCACTAGAATCAGATGTCAAAAGGGCTAACAATTTGGTCGAAAAGTACAGGAACCGTGGCAGATTCTATCTTCTGGTTAAGTGCAGATACATAGTTGGGGAGGTTGAGCAAGTCACAAGAGATATTGGCAAGTCTCTGGCTGCACTTTCGCTTGCGAATACTGAAGTCCTAACAAGAATCTCTGATCAGGTTGACAGGCTGCAGAATGAGATGCAGAGAGTGGAGTTTGAGGCTTCGCGGTCGCAGCTTCAGATTGTTGAGAAGTTAGATTATGCACTTAGAGAACAGAAACTCGATCAGGCTTTCGCAAATGACATGCTTGAGGAAATAGCAAGAGCCGTTGGCGTGCCAGTGGAGCCTTCAGAGATAAGCAAAGAATTAGCCAGCATTAGGAAGGAGAAAGAAGAAGCTGCAAGCCGGAAAGAGCGAGCCGAGTACATTTTCTTGGAGCAGATCATTGAGTTACTCTCTAGAGCTGATGCAGCAAGGGACTATGAAGGAGTGAAGAAACAATACTTTGAAAGAGTTCAAGTCATAGAAAGATATGATTCAAGGGAAACTTATATCTTACCACTCAATCCTTTCCTCTGCTCGATAACCGGCGTGGTTATGGTTGATCCTGTTAGCCTTTGTACTGGTACTACATGTGAGAGATCTGCCATTGAAGATTGGTTTCACAATGGGAACCGAACGGATCCAGAAACAAACGAGGTTCTTGAAGAAACTACCCTGAGGTCTAACATTCCACTAAGACAATCCATAGAAGAATGGAGAGAACTTAATTATTGTCTTGTTATAAGGTCTATCAAGGAAAATCTGATCACAAATTATGAAGTGCACGAGTCTTTGAGCCTAATTCAGGCCCTTATGAGAGAAAATTCTATTAACAAGGATTGGATTTCTATTGGAGGGGTAACGGATGTTGTTATCTCTATCCTTGGAAACTCTAATTATAAAGAAGCCAAGTTGAGGATTCTGATTACTCTGAAGGATGTTGTAGAGGGACATGCAAGAAACAAGGAGAAAGTGGCTGAATCTCAAGGATGGGATCAGATTATTTGTTGCTTAGGGGGTGATTCTAGCACTTCAAAGGCAGCAATCGATCTGCTGTACGAGTTGCTTCAAGGGCGGTCCGGCTGGAACAAAAGCTTTTGCAAAAAACTCTCTGAGAATCAGAATGCAATTCCTTTCCTTGTTACCTTTCTAAAGGGATCAGACAACGATCCAGCCGAGGCAGCAGAAAAGATTTTGATGGAAGTTTTCAAAATAAATGAGGAAAGTATTACAACTGCTGCTAGATTTGGCTGGTATAAACCCCTCGTTGATCGCATGATTCAAGAACCAGATTCGAGACTAGGAATGGCGAAAGGCATAGTAAGCTTGGAGTTAAACCTGTTAGAGTTGAAAGAACTTGGTGAGGAAGGTGTTATACCTCCTCTTCTAGAAATGCTATCTGGAAGCATTGAATCAAAGGACTTGTCACTATCAGCACTGGTTAAACTAGCAGGATGTCCTCCAAACAAGAGAATAATCGCAGAATCTGGAGGTGTTCCTTTGATTCTAGATCTAACATTCTCAACGCGGATGAGGACATTCATTACTATCAAATGCTGCGAAATCCTGGAGAAGCTTTCCTTTGATGAAGATGGAATAGACTTGTTTGTTGACAGAGAAGGGAATCAACTTGAGTTAGATTCCATCATCACCAATTTGCTAGCATTGCAGCAGAGTTTCAACACTGGATACAATTTTCGCAAGCCTGCGCTGCGCGCTCTTTTAGGCATTTGCAAGTTTGAGACTGATTTAATTAAGAAGGCAATTCTTGCAGCCAATAGTGTGTCTCTAATTCTTCCACTTCTTGATGACTCTGATTCAGAAATCCGAGAAACTGCAATAAACTTGCTCTTTCTATTCTCCCAGCACGAGCCGGATGGAGTAGTTGAGTATCTCTTCAGGCCTAGAAGGCTAGAAGCCTTGATTGGTTTTCTTGAGAATGATGAGAATGACAATGTGAGGATGGCTGCGGCCGGATTACTCGCAAACCTTCCTAAATCAGAAAGAGAACTCACTATGAAGTTGATTGAATTAGGTGGACTTGATGCTATAATAAGCATATTGAGAACTGGTACAATGGAAGCCAAGGAAAATGCTCTGAGTGCACTCTTTAGATTCACTGATCCTACAAATATTGAGTCGCAGCGCGATCTTGTTAAACGAGGGATATATCCTCTACTTGTCAACTTTCTCAACACTGGTTCCGTCACAGCAAAGGCAAGAGCAGCAGCATTCATTGCTGATCTATCAATGAGCACTCCAAAGCTCACAATTGTTTCTAAATCGCCCGGCTGCTGGTTTTTCAAGTCATCACGAGTTCCCTTATGCTTGGCGCATGGAAGCATATGCAGTGTTGCCACCACATTCTGCCTTATTGAAGCAAATGCCTTACCTGGATTGATCAAATTACTGCATGGAGAGGTTCATGCTACTGCTTATGAAGCAATTCAAACACTTTCCACATTGGTTTTGGAGGATTTTCCTCAGAGAGGAGCCATAGTCCTGCATAAGAACAATGCAATAACACCCTTGTTGGAGATTCTGAATTGGGGTTCTGATTATCTCAAAGCTGAAGCTCTAGGATTATTAGAAAAGGTCTTTGTGTCAAAGGAAATGGTGGAGTATTATGGAACAACAGCCAGGTTGAGGCTAATTGGAATCACTGGCATGAATATCTATGGAGATGGCCACCTTAGAAGGAAGGCTGCTAAGGTACTATCTTTGCTCGAGCGATATTCGAGATCATCGTCCTCTGCAATCTCCGGTGTTCCGGAGTGA 3042 0.4257 MVGLEIIPIGTILAVLTNQVLKTAHAAADVLIGKESFKILSKHLFDIEPVLKELQLQELNESQAARAALESLESDVKRANNLVEKYRNRGRFYLLVKCRYIVGEVEQVTRDIGKSLAALSLANTEVLTRISDQVDRLQNEMQRVEFEASRSQLQIVEKLDYALREQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRKEKEEAASRKERAEYIFLEQIIELLSRADAARDYEGVKKQYFERVQVIERYDSRETYILPLNPFLCSITGVVMVDPVSLCTGTTCERSAIEDWFHNGNRTDPETNEVLEETTLRSNIPLRQSIEEWRELNYCLVIRSIKENLITNYEVHESLSLIQALMRENSINKDWISIGGVTDVVISILGNSNYKEAKLRILITLKDVVEGHARNKEKVAESQGWDQIICCLGGDSSTSKAAIDLLYELLQGRSGWNKSFCKKLSENQNAIPFLVTFLKGSDNDPAEAAEKILMEVFKINEESITTAARFGWYKPLVDRMIQEPDSRLGMAKGIVSLELNLLELKELGEEGVIPPLLEMLSGSIESKDLSLSALVKLAGCPPNKRIIAESGGVPLILDLTFSTRMRTFITIKCCEILEKLSFDEDGIDLFVDREGNQLELDSIITNLLALQQSFNTGYNFRKPALRALLGICKFETDLIKKAILAANSVSLILPLLDDSDSEIRETAINLLFLFSQHEPDGVVEYLFRPRRLEALIGFLENDENDNVRMAAAGLLANLPKSERELTMKLIELGGLDAIISILRTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIADLSMSTPKLTIVSKSPGCWFFKSSRVPLCLAHGSICSVATTFCLIEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEDFPQRGAIVLHKNNAITPLLEILNWGSDYLKAEALGLLEKVFVSKEMVEYYGTTARLRLIGITGMNIYGDGHLRRKAAKVLSLLERYSRSSSSAISGVPE 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02300 1013 SUPERFAMILY ARM repeat 357 713 IPR016024 -
Aip09g02300 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Aip09g02300 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Aip09g02300 1013 SUPERFAMILY RING/U-box 248 330 - -
Aip09g02300 1013 SUPERFAMILY ARM repeat 648 998 IPR016024 -
Aip09g02300 1013 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Aip09g02300 1013 Gene3D - 8 123 IPR036537 GO:0007166
Aip09g02300 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Aip09g02300 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Aip09g02300 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Aip09g02300 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Aip09g02300 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Aip09g02300 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Aip09g02300 1013 SMART arm_5 713 754 IPR000225 GO:0005515
Aip09g02300 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Aip09g02300 1013 Coils Coil 127 154 - -
Aip09g02300 1013 Gene3D - 518 848 IPR011989 -
Aip09g02300 1013 Coils Coil 62 89 - -
Aip09g02300 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 334 IPR013083 -
Aip09g02300 1013 Gene3D - 855 1008 IPR011989 -
Aip09g02300 1013 Gene3D - 348 517 IPR011989 -
Aip09g02300 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02300 Aip-Chr9 106625661 106629916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02300 265 970 U-box Gene Family AT1G76390 27.523 1.48e-36 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02300 - - gmx:100783638 1554.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g02300 09 106625661 106629916 Aip09g02300 09 106625661 106629916 ECH