Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02251 ATGCTGCTGCTGATGATGATGAAGGAAACTGTGTGTGAGAAAGAAGTGTGCTTGTTGTATGCAGGAGGAGGCGAGTGTGAGGGATTTAGAGAGAGAAGAGAGGCACTTTCCCTTTTTCATTGCGCTACCTTCAAGTCTCTGATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATTCCATGGGACGTGGACACTGAGGGCTTGAGGGAATACATGAGCAAGTACGGTGAATTGGAAGATTGTATTGTCATGAAGGAGCGATCAACTGGACGATCTCGTGGATTTGGATATGTTACATTTGCTTCGGTGGATGATGCTAAGGATGTTCTATCAGGTGAACATGTTCTTGGCAACAGGATGCTGGAGGTCAAAGTGGCCACACCAAAGGAGGAGATGAGAGCACCAGCCAAAAAAGTAACCAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCATCTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATCTGTACATGCCAAAGGATCAAGGATCAAAAATGCATCGTGGAATTGGTTTTATCACCTTTGCAAGTGCAGATTCTGTCGAGAGTTTGATGGCAGAAACCCACGAACTGGGAGGTTCTACCGTGGTGGTTGATCGAGCTACACCCAAGGCAAGAATTTTCATAAAAATGTCTAACGATGATGACTTCAAGCCAGTAGGCAGGATGCCACAGGGAGGGTATGGTGCATATAATGCTTATATTTCTGCAGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGATCATCCAGGCCCAGTCTTCGGAAGGGGAGAACCATCTCGTGGAATCGGTAAGAAGATTTTTGTTGGCCGACTTCCCCCAGAGGCAACTTCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATTTTAGATGTTTATGTTCCCAGGGATCCTAAGAGATCAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCACGAAGGCCTCATGAAATTTGTGGACAACAAGTAGCATTAGATTCAGCCACACCTGTTGATGATGCAAGTCCGAGTGGGAATTTTATGATGAATGGTGTGGGTTCTTTTGGGGGTTATGGAGGTCCTATGCGAACTTATGGGAGGATGTATGGTAGCCTGGACTTCGATGATTGGGGTTATGGAATTCCCAGTGGGAGGCCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1248 0.4495 MLLLMMMKETVCEKEVCLLYAGGGECEGFRERREALSLFHCATFKSLMEQRKLVVLGIPWDVDTEGLREYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKDVLSGEHVLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVTEASFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFASADSVESLMAETHELGGSTVVVDRATPKARIFIKMSNDDDFKPVGRMPQGGYGAYNAYISAATRYAALGAPTLYDHPGPVFGRGEPSRGIGKKIFVGRLPPEATSEDLRQYFGRFGRILDVYVPRDPKRSGHRGFGFVTFAEDGVADRVSRRPHEICGQQVALDSATPVDDASPSGNFMMNGVGSFGGYGGPMRTYGRMYGSLDFDDWGYGIPSGRPSRADWRYRPY 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02251 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 356 IPR000504 GO:0003723
Aip09g02251 415 SUPERFAMILY RNA-binding domain, RBD 49 133 IPR035979 GO:0003676
Aip09g02251 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 199 IPR000504 GO:0003723
Aip09g02251 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 335 IPR000504 GO:0003723
Aip09g02251 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 110 IPR000504 GO:0003723
Aip09g02251 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 127 IPR000504 GO:0003723
Aip09g02251 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 215 IPR000504 GO:0003723
Aip09g02251 415 Gene3D - 279 360 IPR012677 -
Aip09g02251 415 SUPERFAMILY RNA-binding domain, RBD 136 239 IPR035979 GO:0003676
Aip09g02251 415 Gene3D - 42 134 IPR012677 -
Aip09g02251 415 Gene3D - 135 219 IPR012677 -
Aip09g02251 415 SMART rrm1_1 281 352 IPR000504 GO:0003723
Aip09g02251 415 SMART rrm1_1 52 123 IPR000504 GO:0003723
Aip09g02251 415 SMART rrm1_1 140 211 IPR000504 GO:0003723
Aip09g02251 415 SUPERFAMILY RNA-binding domain, RBD 280 380 IPR035979 GO:0003676
Aip09g02251 415 PANTHER OS01G0945800 PROTEIN 50 415 - -
Aip09g02251 415 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 50 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02251 Aip-Chr9 103788622 103792430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02251 52 349 Eukaryotic Initiation Factors Gene Family AT2G23350 25.817 3.89e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02251 K14411 - gmx:100795240 667.151