Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02223 ATGTCCGTACCCCCATCCTCGACTGAGATTTCGGCTTCCGTCGTCGGTTCTGGCCACATGCCGGAAGCTATGGCTATCTCTACGATTCGATTCAATCCCACCATGAGGGTGTTGTTCTCTTCGTTGTGTCTGTTCCCTCTCCCCAGGGTTCCTCTGTCTCTCTCTGTCGAGCATACCTCATTCTCCATCTCGATTTCTCGGTTTTCGATAGCAGATGTTGCCACCGCGGTTCAAGAGGTATATGTGGGCTATGGAATGAATAACTGTGTTGATCTAGTGGAGAAAATCACTCCGTGGAGAGAATCATGGAAAGTGCATGTTAAAGTTGTGAAGTTGTGGTACCACAAGAATCCTGCTTTGGATCCTTCTCAAAATCTGTTGCATATGGTCTTAATGGATGAGAAGTTACACAAGATCCAGGCCACCATTAGAGATCAGCTTATATCAAAATTTGTCGTGTCTCTAAATGAAAGGGATGTGTACTTGATGACCCATTTTACAGTTGTACCGAACACTGGTTTGAACAGAGTGACAAAACATCGGTTCAGACTTTTGTTCCAATACAACACCTCTATTGTTTCTGTGGTATCTCCAAGGATACCTCATTCCGGTCTGTGTTTTGCATCAATAGATGAAATTGATCAAATGACAAAGGACCATAATTTCCTCATTGACTTTGTTGGGATCATTACTGGTGTTCGAAAAGAAAGAGATGTGGCATCATATGGGAAGCTGGTCAAAGCAGTGGTGCTAGAAGTCTTTACTGATGGCAAAAGGGTACAATGCAATGTGTTTGGAAATTCTTGTGATCTGTTAGAATATGATAAGTTACAAAAATATCCAAGATCTCCGCTGGTTGTCCTCGAGTCTTTTAAAATCAAAGCAATTGAAGGTGGGGTAATCCTACAGAATGTGATAAATGTCTCTAGGTTATTCATTAATCCTGACATTCCTGAGTCTGTTGAGTTCCTAAGCAGATTTACTGTAGCCAGTTATGGATTCTCAAGACTTGTGACCAATGACTTTGGATACTTAGTTTCTAAAGTTGATGGTGATTATTTCAATCCCAAAGAGATTATTAATATTCAAGATCTTCATTCAGATGATGGGGATTCTCATTACTTTGTTATTGGGACAATTAAGGAAGTTATGGATGAACCAAATTGGTGGTACTACACACGTGTCTGTGGTCATGCTGTTGTTGAGCATGAGGATCTCTACCTTTGTGATGCTTGTGGTTCATGTGTTGAACATGTTATGGTCAAATATGGGATTCGGGTAAAGATTCAGGATGATGGGTGTACTGTTTTGTTTGTTCTGCTTGATAATGCGGCAACAAAACTATTTGGAAGAACCTGTTCTGAAGCATTTCTCAGGATAGAAGAAGAATTTCCTGTTGATCCTAGTGTGCTTGTAGTATGA 1422 0.4079 MSVPPSSTEISASVVGSGHMPEAMAISTIRFNPTMRVLFSSLCLFPLPRVPLSLSVEHTSFSISISRFSIADVATAVQEVYVGYGMNNCVDLVEKITPWRESWKVHVKVVKLWYHKNPALDPSQNLLHMVLMDEKLHKIQATIRDQLISKFVVSLNERDVYLMTHFTVVPNTGLNRVTKHRFRLLFQYNTSIVSVVSPRIPHSGLCFASIDEIDQMTKDHNFLIDFVGIITGVRKERDVASYGKLVKAVVLEVFTDGKRVQCNVFGNSCDLLEYDKLQKYPRSPLVVLESFKIKAIEGGVILQNVINVSRLFINPDIPESVEFLSRFTVASYGFSRLVTNDFGYLVSKVDGDYFNPKEIINIQDLHSDDGDSHYFVIGTIKEVMDEPNWWYYTRVCGHAVVEHEDLYLCDACGSCVEHVMVKYGIRVKIQDDGCTVLFVLLDNAATKLFGRTCSEAFLRIEEEFPVDPSVLVV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02223 473 Gene3D - 350 469 IPR012340 -
Aip09g02223 473 Gene3D - 92 196 IPR012340 -
Aip09g02223 473 Gene3D - 199 333 IPR012340 -
Aip09g02223 473 SUPERFAMILY Nucleic acid-binding proteins 360 462 IPR012340 -
Aip09g02223 473 SUPERFAMILY Nucleic acid-binding proteins 93 195 IPR012340 -
Aip09g02223 473 CDD RPA1_DBD_A_like 104 192 - -
Aip09g02223 473 PANTHER REPLICATION FACTOR A 1, RFA1 105 451 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip09g02223 473 SUPERFAMILY Nucleic acid-binding proteins 207 329 IPR012340 -
Aip09g02223 473 CDD RPA1_DBD_B_like 225 327 - -
Aip09g02223 473 Pfam Domain of unknown function DUF223 129 212 IPR003871 -
Aip09g02223 473 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 105 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02223 Aip-Chr9 101624475 101627462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02223 90 457 Core DNA Replication Machinery Family AT5G45400 19.851 1.47e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02223 - - aip:110268227 716.457