Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02219 ATGGTCGTTAGTGGAGGGAAGCCTCTGAAGCGCATGAAGAGGAGAGTCACGGCTGATTTCTACGACTTTCTCTCGTTCCCCTCCCCATCACTCGCCGCCCACGAGGGCTTCGCCGGCGCTCCCTTCAGATCTGCCGTCCGATCCTTCCTTACGAAGCACGCGCTTCTCCCGCCGCCTTCCGCGCTCTTCCCTCATCTGCTGACATGGCAGATCCTCTTCCGTGTTGGCGACGTCGCCGGCGAAGGGGGTGCGGAGTCCGGTGGTGCGGCGGCGGTGTGCCTCGACATCGTGGAGGAGGATGTTGCCAGATCCAGATCTGTGTACTGCGACCAGTGCCGAGTTTTCGGTTGGAGCGGCCATCCAGTGTGCGGGAAACGTTACCATTTTATAATCAAAGCTGATGGAAGCTCCATTGGTGGGTACCATAAACCATGTATGTGCTGTGGAGATATCCTGCACTTGTCAGAATCCAAGTGTAAGTCATGCAACCATGCGACTACCACTGATGATGTGGAGGACTGGGTGTACCACCAGTTAGAGAATACGACACATCTCTTACATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTACGCGTTAATGGCAGAGAAGGTGGATCTAGATATCTTTCTGGTTGCCATATCATGGACTTCTGGGATCGCCTATGCAAGACACTTGGAGTCAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGGTTAGAGTACCGCCTACTCCATACAATCATGAAGGGACATCCCTGGTATGGTGACTGGGGTTATCAATTCGGTTCTGGTAGCTATTGTCTCACGCATGAAGCATACAAGACTGCGGTTGACAGCCTATCCAATTTGCCCTTGTCTACCTACCTGTGCCAAGGACAAAATTCTTCCCTCTCTCGTGTCCAGGGCATGATTTCATACTTTCAATCTTTGTCAGACCATGAGCTTGTAAATGTAAGGGACCTCTTTTGTTTTTTGATGGGTTTGATTCATGATGCTCGCGACACTGCAACAAAGGTTGATGACGTGGCCTGCAAGAAGCGCCGTGTTAACGATTCTGGACTGTTATGGTCTTGGGAGAAGAAGGATATTGAACGTGTGGAGGAAGCCATGCTCAAGGTGTTGCGTGCAGTGTCTGGGTCCAATTGGGTGAGCGCTCGAGCTCTTAGGGGTGCAGTCTGCAAGTTGGCCTCTACAGAGCTTCTTGATTATTGCCTTGGAGGACTGGGAGGAAAAGTGGTCTATGGTGGAATGGTTGTTAATGCCCGATGCAACCCTCAAACTGGAACTTTTGAATACAGACTTGAGGCTGCAAATGGCTCCTCCTTTGGAATTATTGCAAACAACTCTTCTGGTTCAAAGTATCCATCCAAAGAGAATCTCCTACAGTGTTTGAGATATTTATATGAGGCTTTGCTTCACCCTCAGATGATGGTAAATTATGCCCCCGAAGGGACAAGGGTTCTTGCAATGAGTTCAGCTCAGAAGCTTCTTGATTGCAAGCAGTTTGTGAAAGACTACACTCCTGGGATGCCCCCAATGTCAGACCTACAGAAAATACGAATATCATGTCGGGTTGAACTGGTGGATGAAGCTGAAGATCCTGCAGCCAAAACTCCACCGGAACTGATTGTGCTGCCTGCAGATGCCACTGTCTCTGATGTTAAGATCGAAGCAGCAAATGCTTTCCAAGATGTATATCTGATGTTCAGAAGATTTCAAGTTGATGAGCTACTTGGCTATAGCGGTGTTGAAGATCCCACCCAGGTCAAGCACTTATTAGGATCAGAAGAACTCGCCACGGTTTGTGTCCGTGGAAGATGCATGGCGAAGAATGGGCTGAGCAAGTTCCGAATGGAACGAGGACTCGAGAGGTGGACCGTAGATTGCAATTGTGGGGCGAAGGATGATGATGGGGAGAGAATGCTAGCTTGTGACGTATGTGGAGTTTGGCGGCATACTAGGTGTTCTAACATCCGCGACATTGATCCCGTTCCAGCGCGATTCGTTTGCCCAAAATGTCAAAACTCTGACCAAAATCCCAAGTCTCTTGGGCACTGCAAAGAGGTGACAGTGACCAACGTTAGTGCTAGTGGTAGCTGCTTTGGAAATGGCTTGCCAATGCCTTCTGATGTTCGTTAA 2151 0.4937 MVVSGGKPLKRMKRRVTADFYDFLSFPSPSLAAHEGFAGAPFRSAVRSFLTKHALLPPPSALFPHLLTWQILFRVGDVAGEGGAESGGAAAVCLDIVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHATTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRYLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHTIMKGHPWYGDWGYQFGSGSYCLTHEAYKTAVDSLSNLPLSTYLCQGQNSSLSRVQGMISYFQSLSDHELVNVRDLFCFLMGLIHDARDTATKVDDVACKKRRVNDSGLLWSWEKKDIERVEEAMLKVLRAVSGSNWVSARALRGAVCKLASTELLDYCLGGLGGKVVYGGMVVNARCNPQTGTFEYRLEAANGSSFGIIANNSSGSKYPSKENLLQCLRYLYEALLHPQMMVNYAPEGTRVLAMSSAQKLLDCKQFVKDYTPGMPPMSDLQKIRISCRVELVDEAEDPAAKTPPELIVLPADATVSDVKIEAANAFQDVYLMFRRFQVDELLGYSGVEDPTQVKHLLGSEELATVCVRGRCMAKNGLSKFRMERGLERWTVDCNCGAKDDDGERMLACDVCGVWRHTRCSNIRDIDPVPARFVCPKCQNSDQNPKSLGHCKEVTVTNVSASGSCFGNGLPMPSDVR 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02219 716 Pfam PHD-finger 633 679 IPR019787 -
Aip09g02219 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 618 684 IPR013083 -
Aip09g02219 716 CDD PHD_MMD1_like 632 677 - -
Aip09g02219 716 PANTHER OS01G0877500 PROTEIN 1 686 - -
Aip09g02219 716 SUPERFAMILY FYVE/PHD zinc finger 621 681 IPR011011 -
Aip09g02219 716 SMART PHD_3 632 678 IPR001965 -
Aip09g02219 716 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 686 - -
Aip09g02219 716 ProSitePatterns Uncharacterized protein family UPF0054 signature. 187 197 IPR020549 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02219 Aip-Chr9 101303720 101308676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02219 92 677 PHD Transcription Factor Family AT5G22260 31.161 2.88e-85 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip09g02219 PHD 1.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02219 - - gmx:100818189 1151.35