Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02216 ATGGAGCCTAATAACTACAATTCTTGTTCTAATGTTGTTGTCACTGATGATGAGAAGAAGCCATTATTAGAAGAGAAAAAGATGGGTACAATAATAAGATACAAAGAATGTCTGAAGAACCATGCAGCTTCACTTGGTGGCAATGCAACTGATGGATGCGGCGAATTCATGCCCTGTGGTCAACAAGGTACCATTGAAGCCCTCATCTGTTCTGCATGCAATTGCCATAGAAACTTTCACAGGAAAGAGATTCAATCTGAAGCTCATCATCATCAACATCAAGTGGTGAAGCATATTTTTGCACACTCATCAATTAGTCTTTCTGATCAATCTTATGATCATGATCATAACGACAATAAGGATTATTGTGAAAAAGGGGGGGTGCGGATGAAGAAGAGGTTCAGAACAAAGTTCACACAAGAACAGAAGGCGAAGATGCTCGATTTCGCGGAGAAGGCCGGATGGAAGATACAGAAGCTAGATGAATCTATGGTGAACAAGTTTTGCCAAGACCTTGGGATCAAGAGAAGGGTACTCAAGGTTTGGATGCACAATAACAAGAACACTTTTGCTGCGAAGAATAAGAAGAATCTTTCTACAACCACCTAG 609 0.4056 MEPNNYNSCSNVVVTDDEKKPLLEEKKMGTIIRYKECLKNHAASLGGNATDGCGEFMPCGQQGTIEALICSACNCHRNFHRKEIQSEAHHHQHQVVKHIFAHSSISLSDQSYDHDHNDNKDYCEKGGVRMKKRFRTKFTQEQKAKMLDFAEKAGWKIQKLDESMVNKFCQDLGIKRRVLKVWMHNNKNTFAAKNKKNLSTTT 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02216 202 Pfam ZF-HD protein dimerisation region 32 84 IPR006456 -
Aip09g02216 202 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 34 83 IPR006456 -
Aip09g02216 202 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 131 188 IPR006455 -
Aip09g02216 202 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 15 195 - -
Aip09g02216 202 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 195 - -
Aip09g02216 202 SUPERFAMILY Homeodomain-like 126 189 IPR009057 -
Aip09g02216 202 Gene3D - 115 193 - -
Aip09g02216 202 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 33 84 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02216 Aip-Chr9 100929842 100930450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02216 30 198 ZF-HD Transcription Factor Family AT1G14440 52.000 1.18e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aip09g02216 ZF-HD_dimer 5.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02216 - - adu:107466050 398.667