Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02206 ATGGGGCGAGAAAAGATTGCGATTCGAAGGATCGACAATTCAACGAGCCAGCAAGTAACATTTTCGAAGAGAAGGAATAGATTGCTGAAGAAAGCTAAAGAATTATCCATTCTCTCTAATGCTAAAGTTGGATTGATTAAAAAGAGTAAGGAACTTGCAACTTGCCAGGGTGAAGTCAAGGCCTTAAGGGCAACTGAAGCTCTGAAGGATAAGGCCATAGAAGAGCTGAGAAATGAAGTTAGTAAACTGGATCAGAAACTTAGAATAACCGAGAATCATCTTAAGGACAAGAATCTAGAAATAAAGAAACTAACAGAAGAAAAGAAAGATGCCTTGGCTGCACAATATGTAGCAGAAGCAACTCTTAGAAGGGTACATTTAGATCAGAAGGATGATGATTATATTCCATTTAAGAGTGTGATCACTCCTCTTGAGGATGAGATCAAGTTGTATAAAAATGAGGATGAAGAAGACGAGACCATTGTAAATGTGGAGTGCCACTATGCTCAAGCAGAAATTGGCAATTGCATTTTTAGTCTTGGTGATTGTGTAATTACAAAACGCCTCCATGTCCTGTTCTTGTTTCTCTCCATTGTTGATTTGCTTTTGAGGTGCTATAAATGGCAATTCCATAACGGAAGCTCAACAAATTGTAGGAGAATCTACACAGATTATAAGGGAAATCCTGATAAAAATCCGTTACTCATCAACACAAGAAGTAACAGTCTTCCTCTGGTTGATATAGTGAATCCAAAGAGCAGGCATAAGGGAAAGCTTGAGATAGAGAGCTTGCTGCAATCAAGAGGTAAGCTTGAGACAGAGACCTTGCTGCAACCAAGAGGTGTTAACTGGACTTCATTAAGGCTCTCATTTCCAAGGTAG 882 0.3912 MGREKIAIRRIDNSTSQQVTFSKRRNRLLKKAKELSILSNAKVGLIKKSKELATCQGEVKALRATEALKDKAIEELRNEVSKLDQKLRITENHLKDKNLEIKKLTEEKKDALAAQYVAEATLRRVHLDQKDDDYIPFKSVITPLEDEIKLYKNEDEEDETIVNVECHYAQAEIGNCIFSLGDCVITKRLHVLFLFLSIVDLLLRCYKWQFHNGSSTNCRRIYTDYKGNPDKNPLLINTRSNSLPLVDIVNPKSRHKGKLEIESLLQSRGKLETETLLQPRGVNWTSLRLSFPR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02206 293 Pfam Microtubule-associated protein 70 44 154 IPR009768 GO:0007010|GO:0008017
Aip09g02206 293 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 46 IPR002100 GO:0003677|GO:0046983
Aip09g02206 293 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip09g02206 293 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip09g02206 293 PANTHER MYOSIN II HEAVY CHAIN FAMILY PROTEIN 43 154 - -
Aip09g02206 293 Gene3D - 13 67 IPR036879 GO:0003677|GO:0046983
Aip09g02206 293 SUPERFAMILY SRF-like 1 49 IPR036879 GO:0003677|GO:0046983
Aip09g02206 293 SMART madsneu2 1 55 IPR002100 GO:0003677|GO:0046983
Aip09g02206 293 Coils Coil 59 114 - -
Aip09g02206 293 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2 43 154 IPR009768 GO:0007010|GO:0008017
Aip09g02206 293 ProSiteProfiles MADS-box domain profile. 1 46 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02206 Aip-Chr9 99831473 99835479 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02206 1 46 MADS-box Gene Family AT2G14210 80.435 1.16e-15 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip09g02206 MAP70 7.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02206 - - ahf:112720626 201.445