Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02181 ATGCCTCCTCCATTTGATTCTATCTCTAAGATCCACCCTCCAAGGGAGGCATGGAGACTTAAAGTTAGGGTACTAAGAACTTGGATTGTTCCTTCATTTGAAAATCATGATGTTGCAAATTCAATGAAAATTGTTCTTATTGACGAAGATTCTAACAAAATCCAAGCAACTGTTAAGAAGCAGCTCATAAATAGGTTTAAAGAGAATATTATTGAGGGTCAAACATACCGAATGTCATATTTTAGTGTTGTTCCAAACCAAGGCAATCATAGGGTAGCAGAACATGAGTTTAAGTTGGTTTTCCTTAACCGTACAACTGTTATTCCTATCTCTGATGATGCTATCCCCAAGACATGTTTCAGTTTTTGTCCATTTGATGAGCTCTTGAAAATGACTGAAGATTATGTTTACTTAGTTGATGTTATTGGTTTGCTAACTTCTGTTGGTGAAGAGAAAGAGTATGTGAAAGATGGCAAAGTGATGAAGATGATCGTTCTTGAGTTATCTTCAAAAGAGTTGACAATACGCTGTGCTTTGTTTGGGGAGTACGTGGATGAAGTGCATCGTTTCTTAGGACAAGTTGGTCTCCAAAATGTTATGCATGCTACTCGCCTATTCTTTAATCCAAATTTGGCTGAAGTTGTTGATTTCAAAAACAGTATGGTTGACCAAGGTATCAATGGAACACAACCATTTGCTAATGAGGGCAAGGGTGTTTCATTGGAAGATAATTTTCTGCGGCTTACTAGGAGATGCACTATTGAGGAACTCCATGATAACAATGAGGAAGGGTCTTTTGTGGTTTTTGGTATTGTGAGACCTACTGTGGATGAGGGACCTTTGTGGTATTCAGCTTGTGTTTGTGGGAAGTCAATTCAGCCTCAAGGTGGTGCATATTATTGTGGTTTTTGTCAGCACTATGTTACCAATGTGACTCCTAGATATAGGATCAAAATAGCGGTCGAGCATGATAATGGACATGGTGTATTTGTCTTATTTGATTGTGAGGCTGCTTACTTACTGAAAAAATCATGTGCTGATCTGTTTGGAGAAGTTCAAAAGGATGCAAGTGATGGTTATTTGGGAAAGATCCCTTCAAGTGACCATGAATATATTGTTGGCAAGAAGGATCCGTGTGAGGTGCTGGATGAGGGTATCACTTCTGATGGGAATTGGTCCAATATCAAGACAAACTGCAAGCCTTCGATTGATTTTCTTGGTGAAAAGGGCGCTGAAGTTCCTGGATTGGATGATATAACACTACAAAAAAATTATGTTTTAGCGACAAATTTTTAG 1296 0.3843 MPPPFDSISKIHPPREAWRLKVRVLRTWIVPSFENHDVANSMKIVLIDEDSNKIQATVKKQLINRFKENIIEGQTYRMSYFSVVPNQGNHRVAEHEFKLVFLNRTTVIPISDDAIPKTCFSFCPFDELLKMTEDYVYLVDVIGLLTSVGEEKEYVKDGKVMKMIVLELSSKELTIRCALFGEYVDEVHRFLGQVGLQNVMHATRLFFNPNLAEVVDFKNSMVDQGINGTQPFANEGKGVSLEDNFLRLTRRCTIEELHDNNEEGSFVVFGIVRPTVDEGPLWYSACVCGKSIQPQGGAYYCGFCQHYVTNVTPRYRIKIAVEHDNGHGVFVLFDCEAAYLLKKSCADLFGEVQKDASDGYLGKIPSSDHEYIVGKKDPCEVLDEGITSDGNWSNIKTNCKPSIDFLGEKGAEVPGLDDITLQKNYVLATNF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02181 431 Pfam Replication factor-A C terminal domain 276 351 IPR013955 -
Aip09g02181 431 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 349 - -
Aip09g02181 431 SUPERFAMILY Nucleic acid-binding proteins 120 221 IPR012340 -
Aip09g02181 431 CDD RPA1_DBD_A_like 19 107 - -
Aip09g02181 431 Pfam Domain of unknown function DUF223 44 132 IPR003871 -
Aip09g02181 431 SUPERFAMILY Nucleic acid-binding proteins 249 355 IPR012340 -
Aip09g02181 431 CDD RPA1_DBD_B_like 140 221 - -
Aip09g02181 431 Gene3D - 114 229 IPR012340 -
Aip09g02181 431 Gene3D - 4 113 IPR012340 -
Aip09g02181 431 PANTHER REPLICATION FACTOR A 1, RFA1 22 349 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip09g02181 431 Gene3D - 241 371 IPR012340 -
Aip09g02181 431 SUPERFAMILY Nucleic acid-binding proteins 3 113 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02181 Aip-Chr9 98399141 98401939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02181 11 381 Core DNA Replication Machinery Family AT5G08020 22.695 1.58e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02181 - - ahf:112778577 518.079