Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02172 ATGGTGATGTTCTCCCCGGCGGCGCGTTCTCCTCCTCCGTCAAGATTTTCTCCAGATCTTTGGTGCTTCTTGGAAGAAGGATCAAACATTGTTAACACTGCTGGTCGCCAAGGTTGCCTGGGTAAATACTTAACTTTCTATTTGCCAGTAGTTAAAAACTCTTGTATCAAAAGAGCAAGAACAAGAGAAGAATGGAAGAAGCAGCAGCCATGGTTGAAAACTTTCTCATTCTCTGCTCTCACAGCTTCTCTTGCTATTAACTACCTTCACAGATTCCTTTTCACCTTCACCGTGAAGAAGAAGCAGCCATGGTTAACTCATCTTGCTGCAGTTGCTTGCATCTCTCTTGCTGCTAAAATGGAAGAGACACAAGTTCCACTTCCTCTTGATTTACAAGTGGAGGACAAAAAACATGTGTTTAAGGCAAAAACAATAAAGAAAATGGAGATTTTGGTACTTTCAACTCTTGAGTGGAAGATGAATCCACCAACACCTCTCTCTTTCATTGATCATATCACAAGAAGACTTAAATGTTTTCAGTTCCTCAACACATGTCAATCTCTTCTTCTTTCTCTCTTACCAGGACCTCACAATATTCAGGGTATTGGGGCTGGTTTTGGGAGAAGGTGGAGTGATGGACTTCACCAAGCAGTTGAAGCAAAGGAAGGGCTACCAATTCAAAATGAAACAGTTACACTGGCTTCCATTAGTTATCAGAATTTCTTTCTGCAGTTTCCTAAGCGTTGTGGTATGACTGGTACATCAGCAACAAAAAGCACAGAATTTGAGAGCATTTACAAGCTTAAAGTTACAATCGTTCCAACAAATAAACCTATGATAAGAAAGGATGAATCTAATGTAGTTTTTAGGGCAACTAGTGTGAAATGGCGAGCAGTTGTAGTAGAAATCTCTAGAATGCATAAAACTGGTCATCCAGTACTTGTTGGCACGACCAGTGTGGAGCAGAGCGATTCTTTGTCAGAGCAATTGAATGAAGCTGGAATTCCACATGAGGTTCTTAATGCAAAACCAGAAAATGTTGAGAGAGAAGCAGAGATTGTAGCTCAGAGTGGTCGGCTTAGGGCCGTGACAATTGCTACCAACATGGCTGGTCGTGGGACAGATATAATTCTTGGCGGTAGTGCTGAATTTATGGCAAGATTAAAGCTTCTGCGTGAACTTCCCAAGGAACTGCAGTTTTTGGACTTGGAGGCAATTGGTAGTGTTGTGACAGATGTTGACATGGTAAAGGAGGCAAAGCCTAGCTTTTACTTGAAAAACATCCTACCTATTATACTTAAAAATCAAGTTGTTCACTTTGTTGGATTTGGGAATCGCCTTGCATTTGACCCAATACCATTTGAACTTCAGGTAATATTTATTTACACGGACATGAACAATGAAAATGTTGGAATAATCTGA 1422 0.4072 MVMFSPAARSPPPSRFSPDLWCFLEEGSNIVNTAGRQGCLGKYLTFYLPVVKNSCIKRARTREEWKKQQPWLKTFSFSALTASLAINYLHRFLFTFTVKKKQPWLTHLAAVACISLAAKMEETQVPLPLDLQVEDKKHVFKAKTIKKMEILVLSTLEWKMNPPTPLSFIDHITRRLKCFQFLNTCQSLLLSLLPGPHNIQGIGAGFGRRWSDGLHQAVEAKEGLPIQNETVTLASISYQNFFLQFPKRCGMTGTSATKSTEFESIYKLKVTIVPTNKPMIRKDESNVVFRATSVKWRAVVVEISRMHKTGHPVLVGTTSVEQSDSLSEQLNEAGIPHEVLNAKPENVEREAEIVAQSGRLRAVTIATNMAGRGTDIILGGSAEFMARLKLLRELPKELQFLDLEAIGSVVTDVDMVKEAKPSFYLKNILPIILKNQVVHFVGFGNRLAFDPIPFELQVIFIYTDMNNENVGII 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02172 473 SMART SecA_DEAD_2 56 263 IPR011115 GO:0005524|GO:0016020|GO:0017038
Aip09g02172 473 CDD CYCLIN 73 153 IPR013763 -
Aip09g02172 473 ProSitePatterns SecA family signature. 363 378 IPR020937 GO:0006605|GO:0006886|GO:0016020
Aip09g02172 473 Gene3D - 162 180 - -
Aip09g02172 473 Gene3D - 215 277 IPR027417 -
Aip09g02172 473 PRINTS SecA protein signature 237 254 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aip09g02172 473 PRINTS SecA protein signature 274 287 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aip09g02172 473 PRINTS SecA protein signature 200 222 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aip09g02172 473 Pfam Cyclin, N-terminal domain 74 161 IPR006671 -
Aip09g02172 473 SUPERFAMILY Pre-protein crosslinking domain of SecA 207 229 IPR036670 GO:0016020|GO:0017038
Aip09g02172 473 SMART cyclin_7 70 154 IPR013763 -
Aip09g02172 473 Gene3D - 74 161 - -
Aip09g02172 473 Pfam SecA DEAD-like domain 177 263 IPR011115 GO:0005524|GO:0016020|GO:0017038
Aip09g02172 473 ProSiteProfiles SecA family profile. 1 473 IPR014018 -
Aip09g02172 473 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 207 379 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aip09g02172 473 Gene3D - 278 427 IPR027417 -
Aip09g02172 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 401 IPR027417 -
Aip09g02172 473 SUPERFAMILY Cyclin-like 73 161 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02172 Aip-Chr9 97027696 97032751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02172 54 193 Core Cell Cycle Gene Families AT4G34160 48.993 1.15e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02172 K03070 - ahf:112727113 348.206