Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02088 ATGATGGCGTTCTTCAGTGGAGCTCAACGATTTCTTCGCCAGTCTTCTTCAGTTGTGGCCTCCCACTTCACCTCTACTCGTTTCACTTCGACTCTTACTTCCCCAAAACTCTTCGTCAGCGGTCTTTCAAGACTGACAACAGATGAAAAACTTACTGAAGCGTTTTCTCCTTTCGGGCAGCTGCTTGAAGCAAAGGTTATAATGGATAGAGCCTCTGGACGGTCAAAGGGATACGCATTTGTAACTTATGCGACCATAGAAGATGCTGAAAAGGCGAGAGCCGGAATGAATGCTAAATTTATTGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAGCCTAGACCTCCTCAGCAGCCACAGTCTCAGCCCTCTGGAGCTGGTTTCACGGTTAACAAGACAATTGGATGGTGTGGTTGA 426 0.4648 MMAFFSGAQRFLRQSSSVVASHFTSTRFTSTLTSPKLFVSGLSRLTTDEKLTEAFSPFGQLLEAKVIMDRASGRSKGYAFVTYATIEDAEKARAGMNAKFIDGWVIFVDPAKPREPRPPQQPQSQPSGAGFTVNKTIGWCG 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02088 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Aip09g02088 141 SMART rrm1_1 36 109 IPR000504 GO:0003723
Aip09g02088 141 MobiDBLite consensus disorder prediction 112 133 - -
Aip09g02088 141 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 141 - -
Aip09g02088 141 Gene3D - 21 135 IPR012677 -
Aip09g02088 141 PANTHER NUCLEOLAR PROTEIN 8 2 141 - -
Aip09g02088 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 103 IPR000504 GO:0003723
Aip09g02088 141 SUPERFAMILY RNA-binding domain, RBD 34 135 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02088 Aip-Chr9 88426079 88427836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02088 37 126 Eukaryotic Initiation Factors Gene Family AT3G16380 36.559 1.97e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02088 - - gmx:100306326 192.971