Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02077 ATGCTTAGAGTTATTTGTGGCATGGAAACAAGAGTGGGTCGTAGCATTGTGTTATTGTTCTTGTTGGTGGTGCTTGGTTGTGTTTCTGGGAATGATTCTGGAGAATACGACAACTGCAACTGTGATGATGAAGAAGGGATTCTAAGCATACAAAACATACTAGTTGGGCAGAAAGTGAGTGACTTTCTGATCTCCATTGCATATTTCTCCATACCCATTGAGCTACTTTACTTTGTGAGCCGTTCCAATGTCCCGTTTAAACTGCTGTTTCTTCAGTTCATAGCATTCATTGTGCTGTGTGGATTGACCCATTTGCTCAACACCTATTCCTACCATGGCCCTCCTTCTTTCCAACTTGTGGTTTGTCTCACAGTTGCTAAGTTCCTCACTGCCCTTGTTTCTTGTGCAACTGCATTGACCCTTCCACCATTGATCCCTCTCCTACTTAAGGTCAAGATCAGGGAGCTCTTCTTGAGGCAGAATGTCTTGGAGTTGGATCAGGAGGTTGGAATGATGAAGAAGCAGAAGGAGACGAGTTTGCACGTTCGGATGCTCACCAGGGAGATTAGGAAGTCCCTTGATAAGCATACTATATTGTACACCACGCTTGTCGAGCTCTCCAAGGCGCTGGATTTGGACAATTGTGCGGTTTGGATGCCAGATGAGGAGAGAAGGGAAATGCATTTAACACACGAATTGAAAGCTAGCCCATCGAGGGATTTTCGCAATTATGTCCCTAGGAACGATTCGGATGTTTTGGATATAAAAATGAATAGGGGGGTGAGGATTTTGCGGCCGGAATCTGCGCTGGGAATTGCGAGTAATGGCGGCCATGGGGGCACTGGGGGTGCAGTGGCAGCTGTTCGAATGCCCATGCTTCGCGTTTCGAATTTCAAAGGCGGGACCCCGGAGAAGGTTGAGACATGTTATGCTCTACTGGTTTTGGTTCTTCCAAAATCAAACTTGCGTGTTTGGACTAACCAAGAGCTCGAGATAGTGGAAGTTGTTGCTGATCAGGTAGCTGTGGCCTTGTCTCATGCATTCATTCTTGAAGAATCACAGAGAATGAGACAGAAACTCGCAGAGCAGAACCGAGTATTGCAGCAGGCTAGAAAGGATGCAATGATGGCCAGCCAAGCGAGGAAAGCGTTTCAGAAAGTGATGAGTCATGGAATGCGGAGGCCTATGCATTCCACTCTGGGGCTTCTTTCGCTGTTACAAGATGAAAATATGAGACCTGAACAGAAGATTATTGGCAACTCAATGTTGAAAGTTAGCAGGGTGCTCTCAAATTTAATTAATGACGTAGTAGGGATTTCAGAGAATGAAAAGGGAAGCTTTCCATTAGACATGAAACCTTTCCTTCTACATTCAATGTTGAAGGAAGCCGCTTGTATTGCCAAGTGTTTGTGTGTATATAAAGGCTTTGGTCTTGAGATTGATGTCCAGAAATCTTTGCCTGATCTGGTTGTAGGTGATGATGAGAGGGCCTTACAAGTAATTCTGCATATGATTGGCGATTTATTGAACACATACGATCAAGGGAACCTCAAGTTTCGTGTCTTTTTAGAAAGTTATGGTGGAGATAAGGATGATAAAATCAATGAAGCATGGAATATGAGGAATCAAAATGATTATGTACATATCAAATTTGATTTTCAGGTAATCAGTAGTTCTCAATCGGAGGAGCTGGTTCCGACCATAAATTATGCCAGTCGTGGGTACCACAACAATGAACAAACAGAGGGCATGTGCTTCAGCTTGTACAGAAAGTTGGTGGAGATGATGCAAGGTTATATCTGGATATCACCAAATCCTCAGTGTTTGCCACAAGGCATGACACTTCTTCTGAAGTTTCGGAAAGCACCACCGCTCGGAAAATCCATAGTTGCGCCGAGAGATTATTTGAATTCGCAGTTTAAAGGCCTTAAGGTTGTGTTAGCCGACGATGACTGTGTAAACCGGATTGTGACGAAGAAGCTACTCGAGAAGCTTGGATGTCAAGTAACTGCCGTTTCTTCGGGCTTCGAATGCCTGAGTGCCATAAGCGCCTCAAATAACTCGTTCCGAATAATCCTGTTAGAACTTCATATGCATGACATGGATGGTTCTGATGTGGCAGGGCGGATCCGGAACTTCCATAAGTGGCCCTTGATTGTAGCCCTTTTGTCGAGTGCCGAAGAACATGAGAAGCAGAGATGCATTCAGGTTGGAATAAATGGATTCGTGCACAAACCTGTACAACTTCATGAGATGGCTGATGAACTTGGAAGAGTGCTGCAACGTGCCGGTGCATAA 2298 0.446 MLRVICGMETRVGRSIVLLFLLVVLGCVSGNDSGEYDNCNCDDEEGILSIQNILVGQKVSDFLISIAYFSIPIELLYFVSRSNVPFKLLFLQFIAFIVLCGLTHLLNTYSYHGPPSFQLVVCLTVAKFLTALVSCATALTLPPLIPLLLKVKIRELFLRQNVLELDQEVGMMKKQKETSLHVRMLTREIRKSLDKHTILYTTLVELSKALDLDNCAVWMPDEERREMHLTHELKASPSRDFRNYVPRNDSDVLDIKMNRGVRILRPESALGIASNGGHGGTGGAVAAVRMPMLRVSNFKGGTPEKVETCYALLVLVLPKSNLRVWTNQELEIVEVVADQVAVALSHAFILEESQRMRQKLAEQNRVLQQARKDAMMASQARKAFQKVMSHGMRRPMHSTLGLLSLLQDENMRPEQKIIGNSMLKVSRVLSNLINDVVGISENEKGSFPLDMKPFLLHSMLKEAACIAKCLCVYKGFGLEIDVQKSLPDLVVGDDERALQVILHMIGDLLNTYDQGNLKFRVFLESYGGDKDDKINEAWNMRNQNDYVHIKFDFQVISSSQSEELVPTINYASRGYHNNEQTEGMCFSLYRKLVEMMQGYIWISPNPQCLPQGMTLLLKFRKAPPLGKSIVAPRDYLNSQFKGLKVVLADDDCVNRIVTKKLLEKLGCQVTAVSSGFECLSAISASNNSFRIILLELHMHDMDGSDVAGRIRNFHKWPLIVALLSSAEEHEKQRCIQVGINGFVHKPVQLHEMADELGRVLQRAGA 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02077 765 SMART REC_2 643 756 IPR001789 GO:0000160
Aip09g02077 765 ProSiteProfiles Histidine kinase domain profile. 387 623 IPR005467 -
Aip09g02077 765 PANTHER TWO-COMPONENT HISTIDINE KINASE 16 760 - -
Aip09g02077 765 SUPERFAMILY CheY-like 639 762 IPR011006 -
Aip09g02077 765 Pfam GAF domain 196 344 IPR003018 GO:0005515
Aip09g02077 765 Gene3D - 366 445 - -
Aip09g02077 765 Gene3D - 446 620 IPR036890 -
Aip09g02077 765 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Aip09g02077 765 Gene3D - 643 765 - -
Aip09g02077 765 ProSiteProfiles Response regulatory domain profile. 644 760 IPR001789 GO:0000160
Aip09g02077 765 Gene3D - 182 356 IPR029016 -
Aip09g02077 765 CDD HisKA 378 440 IPR003661 GO:0000155|GO:0007165
Aip09g02077 765 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 365 445 IPR036097 GO:0000155|GO:0007165
Aip09g02077 765 Pfam Response regulator receiver domain 645 754 IPR001789 GO:0000160
Aip09g02077 765 PANTHER ETHYLENE RECEPTOR 16 760 - -
Aip09g02077 765 CDD HATPase_ETR2_ERS2-EIN4-like 486 617 - -
Aip09g02077 765 Coils Coil 350 373 - -
Aip09g02077 765 SUPERFAMILY GAF domain-like 197 347 - -
Aip09g02077 765 SMART gaf_1 194 354 IPR003018 GO:0005515
Aip09g02077 765 PIRSF Ethylen_sen_hybr_HK 12 765 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Aip09g02077 765 SMART HisKA_10 380 445 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02077 Aip-Chr9 87104611 87108441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02077 28 764 Miscellaneous Gene Families AT3G04580 57.086 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip09g02077 GAF 5.4e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02077 K14509 - gmx:100811462 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01140 06 16572625 16577451 Aip09g02077 09 87104611 87108441 ECH
Aip09g02077 09 87104611 87108441 Aip09g02077 09 87104611 87108441 ECH