Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02070 ATGGAAGTTATGCCTTTTTGTGTCACATTCACTAAATTTCATACATTTTCCTTTCTGAAACCAAACGTAACAACAACCGAAATTCAGGGCCTTTCACTACCCAATAATAGGAGCAAACATTGCAATCTTTATTCATTTTCTTCTTCATCTTCAAGAAGTATAGCAGCAACAGCAACACTATACCCTTCTGCCACACAGAAGAACCGCTACTGGATGGTACTCATGGAGCCTCCACCTCATGGTGTCACCTCCAAGTCACAACTCATCAATTATTACGCCAACACTCTACACAAAGTCCTTGCCAGTGAGAGAGATGCTCAAATGTGTATATATGATGCTTCCTGCGATACACACTTTGGTTTCTGTTGTGACATTGATCCACAAATAACCTCCCAACTCACAAGTTTACCGGGGGTCTTGTTGGTTAGGCCTGATCCGGATTTCAGTTCTTCGGAAAAGGACTATAGTCTATCAAGTGGTCAAGAAGGTCTGCTATCGAATTCAAAACTACAATTTGAAACTAACATGTTATTCTTTCTTGAGAATTCAAAGCATTGGCTTGTTAGAATTGATAAACCTGCTGTTGGGATTGTTACAAAGGCTCAGATTGTCGATTATTTTGTTCAAATATTGACCAAGGTGATGGGAAACGAAAAGGATGCTCAGATGTGCATATATCATGTTTCCTGGAAAAAAATATTTGGTTTTTGCTGTGAACTTGATGACGACTGTGCACAGGAGTTAGCTGGTGTGCCTGGTGTCTTATCAGTTCAACCAGATAATAATTTTGAGTCAGCAAATAAGGATTATGAAGGTAATAACTTAGAAAACAGTTTGAGTGTGCAAAAATCTTTGGAAACAAGTCAGGCAGCTCCCCTGCGAACGAAAAAGCTTTTTGTGACAGGGCTATCGTTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGATCTTGTTGAAGTCAAAATCATTATGGATAAAATTTCGAAAAGGTCCAAGGGTTATGCATTTGTTGAGTACAGCACAGAGGAGGCTGCAAGCGCAGCATTGAAAGAGATGAATGGCCAGATTATTAATGGATGGATGATAGTAGTGGATGTTGCCAAGACTAACCCACCAAGGGATCATGTCAGGCGATCAGTTTGA 1158 0.3998 MEVMPFCVTFTKFHTFSFLKPNVTTTEIQGLSLPNNRSKHCNLYSFSSSSSRSIAATATLYPSATQKNRYWMVLMEPPPHGVTSKSQLINYYANTLHKVLASERDAQMCIYDASCDTHFGFCCDIDPQITSQLTSLPGVLLVRPDPDFSSSEKDYSLSSGQEGLLSNSKLQFETNMLFFLENSKHWLVRIDKPAVGIVTKAQIVDYFVQILTKVMGNEKDAQMCIYHVSWKKIFGFCCELDDDCAQELAGVPGVLSVQPDNNFESANKDYEGNNLENSLSVQKSLETSQAAPLRTKKLFVTGLSFYTSEKTLRAAFEGFGDLVEVKIIMDKISKRSKGYAFVEYSTEEAASAALKEMNGQIINGWMIVVDVAKTNPPRDHVRRSV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02070 385 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 42 381 IPR039206 GO:0016554
Aip09g02070 385 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 180 264 IPR037045 -
Aip09g02070 385 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 52 149 IPR037045 -
Aip09g02070 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 374 IPR000504 GO:0003723
Aip09g02070 385 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 42 381 - -
Aip09g02070 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 364 IPR000504 GO:0003723
Aip09g02070 385 SMART rrm1_1 297 370 IPR000504 GO:0003723
Aip09g02070 385 Gene3D - 265 384 IPR012677 -
Aip09g02070 385 SUPERFAMILY RNA-binding domain, RBD 288 381 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02070 Aip-Chr9 85636547 85640139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02070 296 378 C2H2 Transcription Factor Family AT2G19380 33.735 3.19e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02070 - - gmx:100791652 509.605