Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02056 ATGTTTGCTCTCTTGTCCTGTTTGAAGCATCCCCGGCGTGTTCAGTCTCACTGCATCCCGCGAGTCCTGGAGGGCCGCCACGTGCTCGGCATCGATGAAACTGGCAGCGGCAAGACCGCCGCTTTCGCCCTCCCGATCCTCCACCACCTGTCGGAGCACCCGTTCGTGGTTGTCGGCGGCATGGACATGCTTTGGCAAACCAAGGAGCTTGCTGCCAGGCCCCACGTCGTTATTGCCACGCCAGGGAGGATCAAGTCCTTGCTCGAGAATCCTAATATTCCTTTAGTTTTTGCTAGAACTAAGTTCCTTGTCCTGGATGAAGCAGATCGAGTTCTTGATGTCAGTTTTCAGGAGGAATTGAAATTTATCTTTAAGTGCTTACCAGAAAATCGGCAAAATCTGTTATTTTCTGTAACAACCACAAGTAATGGAAGATATGGACATATTTGA 450 0.5022 MFALLSCLKHPRRVQSHCIPRVLEGRHVLGIDETGSGKTAAFALPILHHLSEHPFVVVGGMDMLWQTKELAARPHVVIATPGRIKSLLENPNIPLVFARTKFLVLDEADRVLDVSFQEELKFIFKCLPENRQNLLFSVTTTSNGRYGHI 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02056 149 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 19 149 IPR014001 -
Aip09g02056 149 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 8 52 - -
Aip09g02056 149 Pfam DEAD/DEAH box helicase 13 52 IPR011545 GO:0003676|GO:0005524
Aip09g02056 149 Pfam DEAD/DEAH box helicase 57 141 IPR011545 GO:0003676|GO:0005524
Aip09g02056 149 Gene3D - 55 146 IPR027417 -
Aip09g02056 149 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 55 143 - -
Aip09g02056 149 PANTHER RNA HELICASE 55 143 - -
Aip09g02056 149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 142 IPR027417 -
Aip09g02056 149 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 104 112 IPR000629 -
Aip09g02056 149 PANTHER RNA HELICASE 8 52 - -
Aip09g02056 149 Gene3D - 3 54 IPR027417 -
Aip09g02056 149 SMART ultradead3 7 149 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02056 Aip-Chr9 81731388 81732409 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02056 6 145 Eukaryotic Initiation Factors Gene Family AT5G11200 26.966 1.60e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02056 K14778 - gmx:100798597 212.616