Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02055 ATGGAGAGGGAGAAGCTGAATTTGAACAAAGAGAGTAATAACAACGGTGTTGGAGGTAATAACAGTAAGAGTGGCGGTGATGGCTTCATTAACAGAAGCAAAGTTAGGATTTTGTTGTGTGATAACGATTCCAAGAGTTCCGAAGAGTTGAAGAATCATTCGTTACTACATGGAAAAGTGATAAGGGTCATGTGGTCTCGTCGCGATCCTGATGTGAGAAAAAGTGGCAGAGGCAATGTTTTTGTTAAGAACTTAGCTGAATCCATAGATAATGCGGGATTACATGATTTATTTCAAAAGTTTGGAAATATCTTGTCCAGCTTTGGGAATTGCTTTGGTGCTTCAAATTGTTTTAGAGGGAATGATGATAGTGATACTTCTGAGAAGCCATGGGAACGAGGTAATAGAATTGAGGTTGTGACTAATTGA 429 0.3893 MEREKLNLNKESNNNGVGGNNSKSGGDGFINRSKVRILLCDNDSKSSEELKNHSLLHGKVIRVMWSRRDPDVRKSGRGNVFVKNLAESIDNAGLHDLFQKFGNILSSFGNCFGASNCFRGNDDSDTSEKPWERGNRIEVVTN 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02055 142 MobiDBLite consensus disorder prediction 10 27 - -
Aip09g02055 142 SUPERFAMILY RNA-binding domain, RBD 51 111 IPR035979 GO:0003676
Aip09g02055 142 PANTHER RNA BINDING PROTEIN 45 108 - -
Aip09g02055 142 MobiDBLite consensus disorder prediction 1 27 - -
Aip09g02055 142 Gene3D - 67 131 IPR012677 -
Aip09g02055 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 106 IPR000504 GO:0003723
Aip09g02055 142 PANTHER POLYADENYLATE-BINDING PROTEIN 45 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02055 Aip-Chr9 81729862 81731129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02055 38 106 Eukaryotic Initiation Factors Gene Family AT2G36660 60.870 3.36e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02055 K13126 - aip:110271131 184.111