Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g02025 ATGTCTACCGCCGCAGCACAGCCCAAGACCAAGAAAACGGCTTCGTCCAAGAAGCTTCCTTCTCACCCCACCTTCGCCGAGATGATAACGGACGCGATTTCGAGTTTGAAAGAGAGAACTGGTTCAAGTCAATATGCGATAACGAAGTTCATCGAAGAGAAGCACAAGAATCTTCCACCAACCTTCCGGAAGCTTCTTCTCCACAACCTCAAGAAATCCGTCGCTGCTGGAAAGCTCGTGAAAGTGAAGAATTCATTCAAGCTTGCGCCGAAAGCTGCTTCTCCTCCCGCTCCAGTGAAGGCTCCAGCGAAGGCTTCTTCTGTTGCCGCCGCCAAGCCTAAAGCGGCGGCGGCTTCCAAGCCTGGTCCCAAGCCTGCATCCAAACCTAAAGCCAAACCAGCTGCCATTACGAAGAAGGCCGCTGCCAAACCTAAAGCCAAAACTGCCCCTACTTCTGCAAAGCCGAAGCGGAAGACAAAAGCGAAGGCTCCGGCGAAGAAGGTTGCTGCCAAGCCGGTGAAGAAGACGCCAGTTAAAAAGCCGAAAAGCGTGAAGTCTCCAGCGAAGAAAGCAGCGGCGAAGAAGACTAAGAAGTGA 597 0.5276 MSTAAAQPKTKKTASSKKLPSHPTFAEMITDAISSLKERTGSSQYAITKFIEEKHKNLPPTFRKLLLHNLKKSVAAGKLVKVKNSFKLAPKAASPPAPVKAPAKASSVAAAKPKAAAASKPGPKPASKPKAKPAAITKKAAAKPKAKTAPTSAKPKRKTKAKAPAKKVAAKPVKKTPVKKPKSVKSPAKKAAAKKTKK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g02025 198 MobiDBLite consensus disorder prediction 1 20 - -
Aip09g02025 198 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 3 195 - -
Aip09g02025 198 SMART h15plus2 19 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip09g02025 198 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 21 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip09g02025 198 Pfam linker histone H1 and H5 family 22 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip09g02025 198 PRINTS Histone H5 signature 8 29 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aip09g02025 198 PRINTS Histone H5 signature 35 52 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aip09g02025 198 PRINTS Histone H5 signature 118 132 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aip09g02025 198 PRINTS Histone H5 signature 154 171 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aip09g02025 198 PRINTS Histone H5 signature 176 195 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aip09g02025 198 CDD H15 20 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip09g02025 198 MobiDBLite consensus disorder prediction 150 198 - -
Aip09g02025 198 PANTHER HISTONE H1 3 195 - -
Aip09g02025 198 SUPERFAMILY "Winged helix" DNA-binding domain 20 101 IPR036390 -
Aip09g02025 198 MobiDBLite consensus disorder prediction 1 22 - -
Aip09g02025 198 MobiDBLite consensus disorder prediction 87 198 - -
Aip09g02025 198 Gene3D - 16 104 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g02025 Aip-Chr9 77031343 77032473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g02025 23 88 Single Myb Histone (SMH) Gene Family AT1G72740 36.364 3.40e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g02025 K11275 - gmx:100810590 132.88