Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01988 ATGGAGCAGTATGATATACTTGAGCAAATTGGCAAAGGTGCTTTCGGTTCTGCGCTTCTCGTGAGACATAAGCATGAGAAGAAAAAATATGTGCTCAAGAAGATTCGCCTTGCACGCCAAACGGAGCGAACTCGTAGATCTGCACACCAGGAGATGGAGCTTATTTCTAAATTTCGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATCATAGGTTACTGTGAGGGTGGGGATATGGCGGAAGCTATAAAGAAAGCTAATGGTTTGCTGTTCCCAGAGGAGAAACTCTGTAAGTGGCTCGTTCAACTTCTTATGGCACTTGACTATTTGCACATGAAGCACATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGACATACGTCTCGCAGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTTGGAACTCCTAGCTACATGTGCCCCGAGCTCCTAGCTGATATACCTTATGGTTCCAAATCGGATATTTGGTCCCTGGGATGTTGTATATATGAAATGACATCACTCAAGCCTGCATTTAAAGCATTTGATATACAAGCATTGATTAACAAGATTAATAGGTCCATAGTGGCTCCATTACCAACAAAATATTCTGGTTCATTTCGAAGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCCAGTGCTGCAGAGCTGCTTGGGCACCCACATCTTCAACCATATGTTCTTAAGATTCATCTCAAAATTAATAGCCCCAGGCAAAATTCATTACCAGTCCAATGGCCAGAATCCAAGTACATGAAGAAAACCAGATTCTTGGAGCCGAAAGATGAACATGTTTCTATCTATAGGGATAAAAGGCATTCTTTTAGCAATGATCGGACTCTAAACCCTAGTATTTCTGGAGCTGATCAAGATTCTGTATGTTCCACCCTAGAAATAGATTGTACTCCAGATGATTTAAATCAGAGGTTAGCAGAGTTGAGTGTCAGAGGTAGCCATGGAGTGAAGTCAATCCATAAGCCTATTCTCTCCAGAACTTCTAGTATGGCTAAGATTCCCAGGATCAGTCATGCAAAACTTTCTTCTACCAACAAGAAATTAATGGAACCCACAAAGGATCTTAAGGCAGGAAGGCAATCTCTTCCTGCTTCAAACAATTCCACAAAATCTACCCAAACAAATCGCAGAGCATCCTTTCCATTGCCATCAAAGGGTACTCAGAAGCCTCCTCACAGGCCTAGTAGTATTGGTTTGCTTAGCCATGTATCTTCACCAGATATTTCAGTCAACTCTCCCCGAATTGATAAAATAGCTGAATTCCCATTAGCATCATATGAAGATCCACTGTTCCGATTCAACAGATCATCCACTGTGATTGACAAATGCACAATAGATGTATATGATAAAGCCTCTGTTAGGGCTTGTAATGCTGATACTTGGCAAGGAATCAAGCGCAGCGTGTTGAAGGAAAACGACGAGGACAAAAAAAGTGGTTCATCCGATCAAAATGCAACAGCAGGTGCATCGAGTCACACCTCTTCGGATCTGCGCCGCCGACAGTTTGATACTTCATCGTACCAACAGAGGGCCGAAGCCTTGGAAGGGCTGCTTGAATTCAGTGCAAGATTGCTGCAGCAGGCAAGGTATGATGAACTCGGGGTTTTGTTGAAACCATTTGGGCCTGAGAAGGTTTCCCCAAGGGAAACTGCAATCTGGCTGAGTAAGAGCTTCAAAGAGAACACATTCAACCCTGAAGAATCCCCGTAA 1833 0.425 MEQYDILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERTRRSAHQEMELISKFRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGLLFPEEKLCKWLVQLLMALDYLHMKHILHRDVKCSNIFLTKDQDIRLAGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQALINKINRSIVAPLPTKYSGSFRSLVKSMLRKNPELRPSAAELLGHPHLQPYVLKIHLKINSPRQNSLPVQWPESKYMKKTRFLEPKDEHVSIYRDKRHSFSNDRTLNPSISGADQDSVCSTLEIDCTPDDLNQRLAELSVRGSHGVKSIHKPILSRTSSMAKIPRISHAKLSSTNKKLMEPTKDLKAGRQSLPASNNSTKSTQTNRRASFPLPSKGTQKPPHRPSSIGLLSHVSSPDISVNSPRIDKIAEFPLASYEDPLFRFNRSSTVIDKCTIDVYDKASVRACNADTWQGIKRSVLKENDEDKKSGSSDQNATAGASSHTSSDLRRRQFDTSSYQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPEKVSPRETAIWLSKSFKENTFNPEESP 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01988 610 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 595 - -
Aip09g01988 610 MobiDBLite consensus disorder prediction 522 536 - -
Aip09g01988 610 CDD STKc_Nek 3 259 - -
Aip09g01988 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Aip09g01988 610 Pfam Protein kinase domain 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g01988 610 SUPERFAMILY Protein kinase-like (PK-like) 1 300 IPR011009 -
Aip09g01988 610 MobiDBLite consensus disorder prediction 400 423 - -
Aip09g01988 610 PANTHER SERINE/THREONINE-KINASE NEK4 1 595 - -
Aip09g01988 610 ProSiteProfiles Protein kinase domain profile. 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g01988 610 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Aip09g01988 610 SMART serkin_6 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g01988 610 Gene3D Transferase(Phosphotransferase) domain 1 86 321 - -
Aip09g01988 610 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Aip09g01988 610 MobiDBLite consensus disorder prediction 512 543 - -
Aip09g01988 610 MobiDBLite consensus disorder prediction 370 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01988 Aip-Chr9 68947774 68952846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01988 10 260 MAP Kinase Kinase Kinase AT1G53570 31.641 7.99e-36 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Aip09g01988 Pkinase 3.6e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01988 K08857 - gmx:100804898 999.964