Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01948 ATGCTCAAACCGCGAACTTCTAAGAAGTACTTAGATGGGTTAGATGAGTTTCTTGATTTTGCATTTCATAATGCAGCTGAAGGAACTCAGATTCTATGCCCTTGTAAGAATTGTAATAATTGTGCTTGGGGAAATCGAGAGGATGTTTACGAGCATTTAGTTTGTGATGGGTTTGATAAGGGACACAGTAAGTGGATATTTCACGGAGAATGTGGATCTTCAAAATCTGCTAAGAAGGATGGATCTGAAATACGAGATAATTTGGATAAATTGTTGGAAGAGACCTTCATGATGTCGAGGCAATTTGAAACCAGTCAATTTGATGATGCATTGGATGAGGATGAAAATGAAGAAGAGCCTGATGAAGAAACTAAGAAGTTTTACAAGTTGATACATGATGCTCATCAAGAATTATATTCAGGCAGTAAAGATTTTACAAAGTTATCAACTATTGTTCGTTTGCTCCACATAAAGAACCTTCATGGTTGGAGCAACGTATCATTTAATATGTTACTACAATTACTCAATGAATTACTTCCCAAAGGCTCGTGTCTACCATCAACATATGAAGAATGCAAGTACATCATCAAGGACTTAGATTTTAGTTATGAAAAATTGACGCTTGTCCAAATGACTGTATCTTATACTGGAAGAAGTTTAAGGAATACACTACTTGTCCAAAGTGTGGTGCTTCTAGGAAAGAATCTTGACGGTCCAATAGGGAATGGGGTGATGATAAGTCTAGATCCTCTTATGTGGGAGCAATCTCATCGTTATGTATTGTTCAATTGTAATATCATCACTCCATATATCAATGGTCTGTTTGATGGAGTTAATCTTTCCTTCGCCCTCAGGCTTTCGGACTTGGCTGGCTATGGAGTAGCTGTAGTTGTTTCCAAAGAATTTGAGGGTTCATTTCGTGGTCGCACATATAAATCTCCACTTCTTGATCTTGTGATCAAAAGTGGGAGAAATGTTCCAGTACTTGTTTCCCTTCTTCGGTCGGGTTCATTGAATGTAAAGATACAGGCAGCAACTATCCTGGGCTCCCTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCGTTGCTTGGTCTTCTAAAGTCTAGTTCCACAGAAGGACAAATTGCTGCTACCAATACTATTTATGCTGTCTCTCAAGATGGTGTGAAAGATCATGTTGGTTCGAAAATATTTTCAATTGAAGGTGTTGTACCAGTGCTCTGGCAGCAGCTGCAGAAGGGCTTGAAATCAGCAAATGTAGTCGAAAGTTTATTGACTGGAGCATTGAAAAATCTCGCCAGCAATATTGAGGGATTCTGGGGTGCAACCATGCAAGCTGGAGGAGTGGACATATTAGTCAAGTTACTGGCAACAGGACAGCCTAGCACCTTAGCTAATGTGTGTTTTTTGCTTGCTTCTGTTATGATGGATGATGCATCTGCATGCTCAAAGGTGTTATCAGCAGATGTGATAAAACAACTCCTTAAACTATTAGGTCCTGGTAATGATGACTCTGTCAGGGCTAAAACAGCTGGTGCTCTTAAGTCTCTATCTTCCCAGTGCAAAGAGGCAAGAAGAGAGATAGCAAATGCTAATGGTATTCCTGCATTAATCAATGCCACAATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTGCGCTCAAGCATTACAGGAGAATGCAATGTGTTCTCTAGCAAACATATCTAGCATTCATTGGTTTCCTTTTCATTCATTAGTTCATTTAGACTGTTAG 1779 0.3957 MLKPRTSKKYLDGLDEFLDFAFHNAAEGTQILCPCKNCNNCAWGNREDVYEHLVCDGFDKGHSKWIFHGECGSSKSAKKDGSEIRDNLDKLLEETFMMSRQFETSQFDDALDEDENEEEPDEETKKFYKLIHDAHQELYSGSKDFTKLSTIVRLLHIKNLHGWSNVSFNMLLQLLNELLPKGSCLPSTYEECKYIIKDLDFSYEKLTLVQMTVSYTGRSLRNTLLVQSVVLLGKNLDGPIGNGVMISLDPLMWEQSHRYVLFNCNIITPYINGLFDGVNLSFALRLSDLAGYGVAVVVSKEFEGSFRGRTYKSPLLDLVIKSGRNVPVLVSLLRSGSLNVKIQAATILGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEGQIAATNTIYAVSQDGVKDHVGSKIFSIEGVVPVLWQQLQKGLKSANVVESLLTGALKNLASNIEGFWGATMQAGGVDILVKLLATGQPSTLANVCFLLASVMMDDASACSKVLSADVIKQLLKLLGPGNDDSVRAKTAGALKSLSSQCKEARREIANANGIPALINATIAPSKEFMQGECAQALQENAMCSLANISSIHWFPFHSLVHLDC 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01948 592 Gene3D - 310 586 IPR011989 -
Aip09g01948 592 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 323 582 - -
Aip09g01948 592 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 323 582 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Aip09g01948 592 SMART arm_5 354 394 IPR000225 GO:0005515
Aip09g01948 592 SMART arm_5 529 578 IPR000225 GO:0005515
Aip09g01948 592 SMART arm_5 312 353 IPR000225 GO:0005515
Aip09g01948 592 SMART arm_5 486 527 IPR000225 GO:0005515
Aip09g01948 592 Coils Coil 522 542 - -
Aip09g01948 592 Pfam Transposase-associated domain 3 70 IPR029480 -
Aip09g01948 592 SUPERFAMILY ARM repeat 313 578 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01948 Aip-Chr9 61972894 61979830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01948 320 537 U-box Gene Family AT3G46510 28.311 6.68e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01948 - - mtr:MTR_8g091470 430.639