Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01946 ATGGCTCCGATTGCAGTTGGAGATGTCATCCCAGATGGCACCTTGGCCTTCTTGGACAACGATAACAAGCCACAGTTTGAGAGCAGAAAGAGCTTAAAGGAAGTGTTGGGAGTGAGGAGTTCTAAGAGCACACAAACTGCTGTTGCTGTTGATACCAACCAAGTTGGACACTTCCAGAAGGTTCTAACTGCCATTGGAAACTTCTGTATCTGTTCCATTGCGATTGGTGTGATGGCTGAGATCATTGTCATGTATCCAATTCAGTACCAAAAATACAGAGATGGAATTAATAATCTTTTGGTTCTATTGATTGGTGGAATCCCCATTGCTATGCCTACTGTGTTGTCTGTGACAATGGCCATTAGATCTCACAGGCTTTCACAACAAGGCGCCCTCATGAAGCGAATGACTGCCATAGAAGAAATGGCTGGAATGAATGTGCTTTGCAGTGACAAGACAGGAACACTCACACTTAACAAGCTTAGTGTTGACAAGAACTTGATTGAGGTCTTTACTAAAGGAGTGAACAAGGATCATGTGATCCTTCTCGCCGCGAGAGCTTCCAGGATTGAAAACCAGGATGCCGTTGATGCTGCTATTGTTGGAATGCTTGCAGACTCTAAAGAGGTAAGGGCTGGAATCAGAAAGCAAAGTGCAAACAATCAAGTGAAGAAAGAAGAGAAGGAAGAAGAAGACAGCTTGGTTCTTGCCATGGAAATGCTGGGTCTGAATGTGGTTCCACTGGCGGTGAATTCAGCTGTTGAGCTTTGTGTGTTTGACACCATAGCCAAATCTGGTGAAGGCGCCATGCTCTCTACAAAGCAAATTGCGTCTCAGATTAGGAGCAACAACCCAGAAGCACCTCACATGCTGGATCACCTTCTTAGGTTGTTGGCAAGTCACTCTCTCCTTCGTTGCTCTGTTTCCCAACAAGATCATAGTCACAGACTCTACAGCCTCTCTCCTCGCTCCAAGTATTTTGTCACTGATGCCGATGATGGCAACTCGTTGGGACCAACCTTGGCTTTGCTTCTCGACAATGTCTTCTACCAAAGCTGGTCACACTTTTCTCTCTGTTAA 1080 0.4537 MAPIAVGDVIPDGTLAFLDNDNKPQFESRKSLKEVLGVRSSKSTQTAVAVDTNQVGHFQKVLTAIGNFCICSIAIGVMAEIIVMYPIQYQKYRDGINNLLVLLIGGIPIAMPTVLSVTMAIRSHRLSQQGALMKRMTAIEEMAGMNVLCSDKTGTLTLNKLSVDKNLIEVFTKGVNKDHVILLAARASRIENQDAVDAAIVGMLADSKEVRAGIRKQSANNQVKKEEKEEEDSLVLAMEMLGLNVVPLAVNSAVELCVFDTIAKSGEGAMLSTKQIASQIRSNNPEAPHMLDHLLRLLASHSLLRCSVSQQDHSHRLYSLSPRSKYFVTDADDGNSLGPTLALLLDNVFYQSWSHFSLC 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01946 359 Gene3D - 244 359 IPR036388 -
Aip09g01946 359 Gene3D - 39 153 - -
Aip09g01946 359 PANTHER CALCIUM-TRANSPORTING ATPASE 48 216 - -
Aip09g01946 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 238 359 IPR016461 GO:0008168
Aip09g01946 359 ProSitePatterns E1-E2 ATPases phosphorylation site. 151 157 IPR018303 -
Aip09g01946 359 Pfam Dimerisation domain 250 299 IPR012967 GO:0046983
Aip09g01946 359 PANTHER PLASMA MEMBRANE ATPASE 48 216 - -
Aip09g01946 359 Gene3D - 161 239 IPR023299 GO:0000166
Aip09g01946 359 SUPERFAMILY Calcium ATPase, transmembrane domain M 50 147 IPR023298 -
Aip09g01946 359 SUPERFAMILY "Winged helix" DNA-binding domain 228 330 IPR036390 -
Aip09g01946 359 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 32 180 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01946 Aip-Chr9 61550256 61553346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01946 52 298 Primary Pumps ATPases AT2G18960 60.465 1.49e-93 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01946 K01535 - gmx:100816905 287.73