Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01934 ATGACACTTGACCTGGAAACTGTCATCCACTTTTCGTATTCTTGTTCAGTTGGATTCCTTCCGATCGTTAAAACAACTGCATTAGAGATGGAGGGAAAAACCGAGGATGAGGTGGTAGATATTGAGAGTGGTTCTAGTGATTCTTTCAATGATGATTCTGATGATGAGGGATCTTTGCCTCCTGAAGTTGATGATGATAGAGTAAATCTTGAGGAACCTTTGACTGAGGAGGAGATACAAGACCTTATTTCTGAGTTGTTAGAAGTAGAGAGCAAGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAGGAGTCTCTTGCCAAAGTGGAGAGTGATGTTAGACAAGAATTGCAGCAAACTCTGACAGAGGATGATTTGGAAACTGCTGTTGCTGATGAGATGGCTACTTTTAAAGAAGAGTGGGAAACTGTGCTGGACGACCTTGAAACTGAAAGTGTCAACTTGCTGGAACAACTCGATGGTGCTGGAATTGAGCTCCCAAGCCTTTATAAGTGGATTGAAAAGGAAGCTCCCAATGGTTGCCGCACTGAAGCATGGAAAAAGAGGAATCATTGGGTAGGGTTGCAGGCAACTACGGAAATTGCTGAATCAGTTGCTGTTGCTGAGAAGTATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAACTACTTGAAGAGGGAGCTAGTGGATTTCTCCAAAAAAAATTTGGTGATGAAACCAAGGATCCTGTAAAGAAAGGAATGGAGGGAGATTGGGATTTGTTCAATAAAATAGTGTCTGATGGGAGTGGCACTGATGTTTCATTTGGCAGTAAGCACTGGGCTTCTGTTTATTTGGCCAGCACCCCACAGCAAGCAGCACTGATGGGACTCAAATTTCCTGGAGTTAATGAGGTAGAGGAGATTGACGATGTTGATGGCAATTCTGCTGATCCATTTGTTGCAGCTGCCATAGCAAATGAAAGAGAACTAGATCTTTCTGAGGAGCAAAAGAAACAATTTAAGAAGGTCAAAGAAGAGGATGATGCTATTGTTGATAGGAAGCTTCAAATCCATTTGAAACAAAGGAGGCGTCGGAAGAAAAGTAAACAGAGCGATAAACTTGAAGATTTTGATGCTGGTTACGATCTTGAAAAGGAAAATGCTATGAGTACTGGTGACTTGGCTGATCCACCCAAATCTTTGTTGGATGATATTATTGAACAGCGGGGAACTAAGCGTTTGAATGATGGTGAGCTTGACACTGATAATAAAAAGCCTCGTACTATTAGTGATGACAGTGACGATGACACAGATGCCATTGAAGACAAGGTAGATAGGAATATGAGTACTCTAGAGAAGGTAAAAGGCTTATTAAACAGTGGTGCTGATACTCTTCCTTCAGTGTGTCCAAATGAGAAATTTCACTGCACAATTTGTGATCAAGTGGCTCTTGAAGTTCACTCACACCCTCTGTTGAAGGTGATTATTTGTGGGGATTGCAATTGCTTAATGGAGGAAAAGATACGCCGAAAGGACCTGAGTTTTGATTCTCCCTCAAGTCATTGTGCATGGTGTGGAGGAAGCAGTGGATTAATTAATTGTAAATCATGCACAATGTTATTCTGCACCAACTGCATAAAGAAGAATCTTGGTGCAGAATCTCTTACTAAAGCTCAGGCCACTGGCTGGGATTGTTGTTTTTGCCAGCCAAATAGTCTGCAAAGACTGACACTGCTATTGGAGCAAGCTATGGGATCTACTGCTAAACTAGTTTCCAGCTCTAGCAGTGATTCAGAAAATTCAGATGATTCAGATGATTCGGATGAGTCTGATGCAGAGATTAATGCTACAATCAGCTCTAAGAGAAGGCGCAAAAAGAAGATTCGAAGGATACTTGATGATACGGAATTAGGTGAAGAAACAAAAAAGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCTTGAAGTCTTTGCGAGGCCAGTTCTCTGCTTCACCAAATGAAATGAGCTCATCAAATTTATCCGAAGGGGCTAGTGTTGAAGTTCTTGGCGATGCGGCATCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTCAGAATTCCTCCGAGCATCTCAGCTAAACTCAAAGCCCATCAGATTGCAGGAATAAGATTTATGTGGGAAAATATAGTAGAGTCAATAAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGCTGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATTGCTTTCTTGTACACTGCAATGAGGTGTGTTGATTTGGGGTTAAGGACCGCACTTATAGTCACACCTGTCAATGTCCTGCATAATTGGCGTCAGGAGTTTATCAAGTGGAAGCCCTCAGAGTTAAAGCAACTCAGAGTCTTCATGCTGGAAGATGTACCAAGAGATAGGAGGGTTGAGCTGCTTGCAAAGTGGAGAACCAAAGGTGGTGTCTTTTTGATTGGTTATACTGCTTTCCGTAATTTATCTTTTGGAAAGCATGTGAAAGACCGGAATGTGGCCAGAGAGATTTGCCATGCTTTGCAGGATGGACCGGACATTCTTGTTTGTGATGAAGCCCATATGATTAAAAATACAAGGGCTGACGTAACTCATGCCTTGAAACAAGTAAAATGCCAAAGAAGAATTGCCCTGACTGGATCGCCCCTTCAAAACAATCTCATGGAATACTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGAAACCGCTTCCAGAATCCTATAGAGAATGGTCAACACACTAATTCGACACTCACAGATGTGAAAATTATGAACCAAAGATCACATATTCTCTATGAACAGTTAAAAGGCTTTGTCCAAAGAATGGACATGACTGTGGTGAAAAAGGATCTACCCCCCAAAACTGTCTTTGTGGTAACTGTCAAGCTTTCTTTGTTACAAAGAAAACTGTACAAGAGATTCCTTGATGTGCATGGGTTCAGTAAAGACAGGGCTCATGAAAAGTTTGGAAAAAGATGTTTTTTTGCTGGTTACCAGGCGTTAGCCCGGATATGGAACCACCCTGGGATCTTGCAATTAACAAAAGAAGACAAGGACTATGTAAGACAGGAAGAAGCTGTTGAGAATTTTATCGTGGATGACTGCAGCAGTGATGATAATTCCGATATTAATGCTGTTGGAGAGAAGATGAGGTATGCAAATGATTTGCCGCAAAAGAAAGATGGTACTGGCTTTTTTGTAAAGGGTTGGTGGCATGATCTACTTCCCGGAAAGATTTATAGAGAGCCTGATCATGGTGGCAAAATGGTTTTGCTACTAGAGATATTAACCATGAGTTCTAGTGTGGGCGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACGCTAGACCTCATAGAACTTTATCTCTCAAAGATACCTCGACATGGCAAACCTGGGAAGCGTTGGAAGAAGGGGAAAGATTGGTATCGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAGGATTGTTGAAAGATTTAATGAGCCCTCAAATAAGAGGGTAAAATGCACTCTGATTTCAACCAGAGCAGGCTCTTTGGGTATTAACCTTCATTCTGCTAACCGTGTTGTTATAATTGATGGTTCTTGGAATCCAACATACGATCTGCAGGCCATCTATCGAGCTTGGAGGTATGGGCAGACAAAACCTGTATTTGCATACCGATTGCTGGCTCATGGCACCATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCCGCTAGAGTGGTTGATAGGCAACAGGTGCATAGGACCATATCTAAAGAAGAGATGTTACATCTGTTTGAGTTTGGTGATGATGAGAACCCTGAGACTTTGGCTGAACTTAATCAAGAAAATGGCAGCAGTAGTAATACAGTTAAACATACAACACCACATTCAAATGGAAGTAGCAACTCTGATAAGCTAATGGAAAGCTTACTTAAAAATCATCAACCCCGGTGGATTGCCAATTATCATGAACATGAAACCCTGTTACAAGAAAATGAAGAGGAGAAGCTATCAAAAGAGGAGAAAGACATGGCTTGGGAGGTGTACAAAAAATCACTTGAATGGGAAGAAGTGGGGAGGGTACCAATTAGTGACCCCATGCCTGATCAAAAGGCAGAGATGGCTGCAAGTTCAAAACTACAACAGGTGAAAGACCCTCTTAGCATGGTGTCAAGTAGTAGGATAAGGAATCGTTTTAACATGAGAAAGTGCACAAACCTTGCACACATGCTCACACTCAGAAGTCAGAGAATAAAACAAGGTGGCTGTACAGTTTGTGGGGAATGTGCTCAGGAGATCAGGTGGGATGACTTGAAGATTACTAAATAG 4398 0.4186 MTLDLETVIHFSYSCSVGFLPIVKTTALEMEGKTEDEVVDIESGSSDSFNDDSDDEGSLPPEVDDDRVNLEEPLTEEEIQDLISELLEVESKAAEAQEALEEESLAKVESDVRQELQQTLTEDDLETAVADEMATFKEEWETVLDDLETESVNLLEQLDGAGIELPSLYKWIEKEAPNGCRTEAWKKRNHWVGLQATTEIAESVAVAEKYLQVNRPVRRRHGKLLEEGASGFLQKKFGDETKDPVKKGMEGDWDLFNKIVSDGSGTDVSFGSKHWASVYLASTPQQAALMGLKFPGVNEVEEIDDVDGNSADPFVAAAIANERELDLSEEQKKQFKKVKEEDDAIVDRKLQIHLKQRRRRKKSKQSDKLEDFDAGYDLEKENAMSTGDLADPPKSLLDDIIEQRGTKRLNDGELDTDNKKPRTISDDSDDDTDAIEDKVDRNMSTLEKVKGLLNSGADTLPSVCPNEKFHCTICDQVALEVHSHPLLKVIICGDCNCLMEEKIRRKDLSFDSPSSHCAWCGGSSGLINCKSCTMLFCTNCIKKNLGAESLTKAQATGWDCCFCQPNSLQRLTLLLEQAMGSTAKLVSSSSSDSENSDDSDDSDESDAEINATISSKRRRKKKIRRILDDTELGEETKKKIAIEKERQERLKSLRGQFSASPNEMSSSNLSEGASVEVLGDAASGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIVESIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWKPSELKQLRVFMLEDVPRDRRVELLAKWRTKGGVFLIGYTAFRNLSFGKHVKDRNVAREICHALQDGPDILVCDEAHMIKNTRADVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMTVVKKDLPPKTVFVVTVKLSLLQRKLYKRFLDVHGFSKDRAHEKFGKRCFFAGYQALARIWNHPGILQLTKEDKDYVRQEEAVENFIVDDCSSDDNSDINAVGEKMRYANDLPQKKDGTGFFVKGWWHDLLPGKIYREPDHGGKMVLLLEILTMSSSVGDKVLVFSQSIPTLDLIELYLSKIPRHGKPGKRWKKGKDWYRLDGRTESSERQRIVERFNEPSNKRVKCTLISTRAGSLGINLHSANRVVIIDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELNQENGSSSNTVKHTTPHSNGSSNSDKLMESLLKNHQPRWIANYHEHETLLQENEEEKLSKEEKDMAWEVYKKSLEWEEVGRVPISDPMPDQKAEMAASSKLQQVKDPLSMVSSSRIRNRFNMRKCTNLAHMLTLRSQRIKQGGCTVCGECAQEIRWDDLKITK 1465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01934 1465 Coils Coil 137 164 - -
Aip09g01934 1465 MobiDBLite consensus disorder prediction 1302 1327 - -
Aip09g01934 1465 ProSiteProfiles ADD domain profile. 459 591 IPR025766 -
Aip09g01934 1465 Coils Coil 1345 1365 - -
Aip09g01934 1465 Gene3D - 680 962 IPR038718 -
Aip09g01934 1465 Gene3D - 973 1320 IPR027417 -
Aip09g01934 1465 Coils Coil 79 106 - -
Aip09g01934 1465 SMART helicmild6 1138 1235 IPR001650 -
Aip09g01934 1465 MobiDBLite consensus disorder prediction 407 434 - -
Aip09g01934 1465 CDD SF2_C_SNF 1096 1246 - -
Aip09g01934 1465 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1112 1283 IPR001650 -
Aip09g01934 1465 PANTHER RAD54-LIKE 53 1461 - -
Aip09g01934 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 968 1303 IPR027417 -
Aip09g01934 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 694 962 IPR027417 -
Aip09g01934 1465 MobiDBLite consensus disorder prediction 585 613 - -
Aip09g01934 1465 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 730 913 IPR014001 -
Aip09g01934 1465 MobiDBLite consensus disorder prediction 47 61 - -
Aip09g01934 1465 Pfam SNF2-related domain 731 1031 IPR000330 GO:0005524|GO:0140658
Aip09g01934 1465 PANTHER RAD54-LIKE 53 1461 IPR044574 GO:0016887
Aip09g01934 1465 MobiDBLite consensus disorder prediction 34 68 - -
Aip09g01934 1465 SMART ultradead3 704 925 IPR014001 -
Aip09g01934 1465 MobiDBLite consensus disorder prediction 407 428 - -
Aip09g01934 1465 CDD ADDz_ATRX 467 565 - -
Aip09g01934 1465 Pfam Helicase conserved C-terminal domain 1110 1235 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01934 Aip-Chr9 59914643 59938873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01934 738 1265 RAD5 or RAD16-like Gene Family AT1G02670 25.360 4.66e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip09g01934 SNF2_N 2.1e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01934 K10779 - gmx:100794911 2160.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01934 09 59914643 59938873 Aip09g01934 09 59914643 59938873 ECH