Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01926 ATGGCACCTAATCCTAGAGTTACCAATGCCTATAATGCTATGAGGACCTTAGGCATTTCTGATGATGAGGTGAGGCCTGTCTTGAAAAGGTTGCTCAAAGTGTATGGTAATAGCTGGGAGCTTATTGAAGAAGACAATTATCAAACACTTGTACATGCATACTTTGAGTCAATGGAATATCAGCAAGGGGAAGGTAAGGGAAAAGCTCCAATCAGTAATCATGATGGAGAAAGAGCAAGACTGAAACTACAGATGATATCTGTAGAGGACAATGAAATACTTTCAAAGACATCCAAAAAGGAAATCATTAGGCCATCTCAGGCATCTAAAGAAGATATAAAACTGACAAATAGTTCTCAACCATTGCAGACAAGGTTGAGTGAGGTAGAAATTATCTCAAGTTTATCTTGCATGGATGCTAGAGATAGTAGAAAATTGTGCCATGAGAATGCAGCATCTGCAGGGCACTGTGGAGATTATTTTGATGGATCTAGCCGTTCCCACATCCAGAAGATACATATGTCAAGTGATCGTTATGAGAAAGAACTTATAATACTAAAAGCTAAGAAACCGAAATTACATCTTGGACCTGTTTCATCACATCTTAAAGGCCCTTGTGATGATTCAAATGTAAATCGTCGTTTCAAATTTATATCAGCTCTTTATCAAAATGGGCCAAATCCCAATCATGCCAATTTGACTAACATGGTACAACAAGTTGTTGTCCATCCTGAATATAATTCTGCAGGCCCATGCGATGATTCAAACATAAATACTCGTTTCAAATCTATATCATCTCTTTATCAAAATGGGCCAAATCCCAATCATGCGAATTTGACTAACATGGTACAACGAGCTGTTATTCATCCTGAACATAATTCTAGAGGCCCATGCGATGATTCAAATGTAAATTGTCGTTTCAAATCTATATCAGCTCTTTATCAATATGGGCCAAATCTCAACCATGCCAATTTAACAAAAATGGCACAACAAGCTATTGTTCATGCTGAAAATAGTTATGTTCAATTTTTGAGTGACATAACAAAAGGTTCTGAAAAGGTTGTAATTTCATTATTAGATGACACTGGAAGTGAGGAGTTGCCTAAGTTTAATTACATACCAAATAATATAATCTATCAAAATGCTAATGTGAACATTTCACTTGCTCGGGTTGCGGATGAGGGTTGTTGTTCTGATTGTTTAGGCAACTGTCTTTCTTTGACATTTCCTTGTGCATGTTCTCAAGAAACTGGTGGGGAGTTTGCTTATACTCGAGAAGGTTTGTTGAAGGAAAAGTTCTTAGAAGCATGCATAGCTATGAAAATCAAACCTCAGCCATATCATTTTGTGTATTGTCAAGAATGCCCAATTTATAAAGGGAGTGAGCACATGCCTGAAGAATGCAAGGGGCATTTGGTTAGAAAGTTTATAAAGGAATGTTGGAGGAAATGTGGATGTGATATGCAGTGTGGAAATCGGGTAGTGCAGCGAGGTTTAAGATGTAAACTGCAGGTATTCTTGACTCAGGAAGGAAAGGGCTGGGGCATTAGAACACTAGAAGATTTGCCCAAAGGCTGCTTTGTATGTGAGTACGTCGGAGAAATATTAACCAATGCAGAATTGTATGAAAGGGTATTACACAAAAGCAGCAAGGACAGACATACATATCCTGTAACCCTTGATGCAGATTGGGGCTCAGAAAGGGTGTTAAAGGATGATGAGGCACTGTGCTTAGATGCAACTTATAATGGAAATATTGCAAGGTTTATCAATCATAGATGCTTTGATGCAAATTTGATAGACATTCCTGTTGAAGTGGAGATTCCTGATCGCCACTATTATCATATTGCTCTCTTTACTAATAGGAAAGTGAAAGCATACAAAGAGTTGACATGGGATTATGGTATTGACTTTGATGATCAGGAACATCCTATTAAAGCATTTCAATGCTGCTGTGGAAGTACCTTCTGCCGTGACAAGAAAAAGAAAGGAACTGGCATGAAAGCTAAAAAACAAAGGTAG 2022 0.3788 MAPNPRVTNAYNAMRTLGISDDEVRPVLKRLLKVYGNSWELIEEDNYQTLVHAYFESMEYQQGEGKGKAPISNHDGERARLKLQMISVEDNEILSKTSKKEIIRPSQASKEDIKLTNSSQPLQTRLSEVEIISSLSCMDARDSRKLCHENAASAGHCGDYFDGSSRSHIQKIHMSSDRYEKELIILKAKKPKLHLGPVSSHLKGPCDDSNVNRRFKFISALYQNGPNPNHANLTNMVQQVVVHPEYNSAGPCDDSNINTRFKSISSLYQNGPNPNHANLTNMVQRAVIHPEHNSRGPCDDSNVNCRFKSISALYQYGPNLNHANLTKMAQQAIVHAENSYVQFLSDITKGSEKVVISLLDDTGSEELPKFNYIPNNIIYQNANVNISLARVADEGCCSDCLGNCLSLTFPCACSQETGGEFAYTREGLLKEKFLEACIAMKIKPQPYHFVYCQECPIYKGSEHMPEECKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLRCKLQVFLTQEGKGWGIRTLEDLPKGCFVCEYVGEILTNAELYERVLHKSSKDRHTYPVTLDADWGSERVLKDDEALCLDATYNGNIARFINHRCFDANLIDIPVEVEIPDRHYYHIALFTNRKVKAYKELTWDYGIDFDDQEHPIKAFQCCCGSTFCRDKKKKGTGMKAKKQR 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01926 673 Pfam Pre-SET motif 347 493 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip09g01926 673 SUPERFAMILY SET domain 355 658 IPR046341 -
Aip09g01926 673 Pfam SET domain 513 635 IPR001214 GO:0005515
Aip09g01926 673 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 GO:0018024
Aip09g01926 673 ProSiteProfiles Pre-SET domain profile. 396 498 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip09g01926 673 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 673 IPR025776 -
Aip09g01926 673 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 668 - -
Aip09g01926 673 CDD SET_SETDB-like 368 635 - -
Aip09g01926 673 SMART set_7 501 641 IPR001214 GO:0005515
Aip09g01926 673 Gene3D SET domain 323 647 IPR046341 -
Aip09g01926 673 SMART preset_2 344 485 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip09g01926 673 Gene3D - 1 59 IPR043017 -
Aip09g01926 673 ProSiteProfiles SET domain profile. 501 635 IPR001214 GO:0005515
Aip09g01926 673 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01926 Aip-Chr9 59245515 59261093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01926 477 658 C2H2 Transcription Factor Family AT2G23740 39.572 4.52e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip09g01926 Pre-SET 7.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01926 - - adu:107465821 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01085 06 16001607 16009288 Aip09g01926 09 59245515 59261093 PCT
Aip09g01926 09 59245515 59261093 Aip06g01441 06 23847950 23852744 PCT