Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01921 ATGTCTTCATCTTTTCCTGTTCTTCCTACATCTGCAGCGCAGGCTTCATCAATAAACTCCAACATCAGAAGTGTTGGTCACATGTTCTCAACCCCTGCTGATTTCCCTGATGATGGCGTGCCATTTCCCACCGCTTCCGAAATCCATTCAACAACACAAGCTTCTCAGCCGCTGCGACAAATTGATGATGTTTCCTGGGGAGCGGATCTGTTCGACAATATTCTTCTGTTTCCTGATAATAACAACGCTCCTTTCCAGAATGATCATACAGTATATAGTGCTCCATACACATCCAGTGATAATCCAAAGGCTGTTGATTTTGAGTGGGTTGATCCCTTCATGTCTGATGATGATCCTCTTCAGCTGAATTGGAACCAGTTTGTCAGTGATACCAATGTAGCAGAGCCAAAACCAAAGGAAAGTCAGTTATCAATACAGCAGCAAGTGCCACCTGTTGAAGCTAACGGTCTTCCAGACTCTGTCTCAACCGCACCCCAAACTAAGCAAAGAATGCGTTGGACTCCGGAGCTTCATGAGGCCTTTGTGGAGGCAGTGAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGAGTCTTGAACCTAATGAGAGTTGAAGGCCTTACCATATATCATGTGAAAAGCCACCTTCAGAAATATAGAACTGCCCGATACAAACCTGAGCCATCAGAAGGAGCTCCTGAGAAAAAGTTGACGGATTCAATTGAAGAAATGAAGCCTCTAGACTTAAAAACGAGTAAGGGGATAACTGAAGCATTGAGATTGCAGATGGAACTTCAAAAGCGGCTTCATGAACAACTTGAGATACAAAGAAAGTTGCAGATTCAAATTGAAGACCAAGGGAAGCGTCTTCAGATGATGTTTGAGAAACAGATAGAGGGCTCGTCCTCTGCTCCACTATCAAGCACGGGGCTACATACAAATGAAAATTCAGAACCCCAGAACGACGACAATGATAAACAGGAACCCGGAGACGAGCAGTTGATTGCGCCTCCCCCAAAACGGGTTAAAAAAGACGAAGGTGTTTCCGTCACCTCTCTGCTCTTCTTTCTCCAATCAAGCTCTGTTCGTCTCGTCTCTGGTCAAGAAGAAGATGAAGTTCTGCTCGAATCATCTCCTCTCTGCACCTATTTGTCTTTGGAAAAGAAGAAGAAGAACCCAGTTCCTCCACGACCTCCCTGTCAATTTTCTGTTCCTTCACGACCTCCCTGTACGACGTCCAAGCCCTACTTTGCCAGGTTTCCACGGCCGACCCTCGCCTGCGTGACGGCTCCAAAGTTGTCTTGCGCTCAACAAGAATGGATCCTCCAACAGGCACTTAAGATCTCCATTACTTATGAAGCCAGCCAGAAAAAAGTGCATTCTGTTGAGAGTAATTTTCAGAAACGAGAAGAGGAAAATGTAGAATCACTTGTGAAGCTACTGGTTGATTGCATCTTGGAAGCCAAAGAAAATATTGATGAAAACTTTGCTGCTTCTCTTCATAATAAAAACATGGAAAGACATTATAACATATGA 1539 0.4457 MSSSFPVLPTSAAQASSINSNIRSVGHMFSTPADFPDDGVPFPTASEIHSTTQASQPLRQIDDVSWGADLFDNILLFPDNNNAPFQNDHTVYSAPYTSSDNPKAVDFEWVDPFMSDDDPLQLNWNQFVSDTNVAEPKPKESQLSIQQQVPPVEANGLPDSVSTAPQTKQRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMRVEGLTIYHVKSHLQKYRTARYKPEPSEGAPEKKLTDSIEEMKPLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQIEGSSSAPLSSTGLHTNENSEPQNDDNDKQEPGDEQLIAPPPKRVKKDEGVSVTSLLFFLQSSSVRLVSGQEEDEVLLESSPLCTYLSLEKKKKNPVPPRPPCQFSVPSRPPCTTSKPYFARFPRPTLACVTAPKLSCAQQEWILQQALKISITYEASQKKVHSVESNFQKREEENVESLVKLLVDCILEAKENIDENFAASLHNKNMERHYNI 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01921 512 Pfam Myb-like DNA-binding domain 170 221 IPR001005 -
Aip09g01921 512 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 9 327 IPR044848 GO:0003700
Aip09g01921 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 225 IPR017930 -
Aip09g01921 512 SUPERFAMILY Homeodomain-like 166 222 IPR009057 -
Aip09g01921 512 Pfam MYB-CC type transfactor, LHEQLE motif 256 298 IPR025756 -
Aip09g01921 512 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 9 327 - -
Aip09g01921 512 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 168 222 IPR006447 GO:0003677
Aip09g01921 512 Gene3D - 167 226 - -
Aip09g01921 512 Coils Coil 257 277 - -
Aip09g01921 512 MobiDBLite consensus disorder prediction 299 318 - -
Aip09g01921 512 MobiDBLite consensus disorder prediction 299 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01921 Aip-Chr9 58962499 58967079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01921 20 346 G2-like Transcription Factor Family AT4G28610 44.663 8.82e-77 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aip09g01921 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01921 - - aip:107618959 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01088 06 16020842 16024908 Aip09g01921 09 58962499 58967079 ECH
Aip09g01921 09 58962499 58967079 Aip09g01921 09 58962499 58967079 ECH