Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip09g01917 | ATGCCTCCTCCATTTGATTCTATTTCTAAGATCCACCCTCATAGGGAGGCATGGAGACTTAAAGTTAAGTCGAACAAAATCCAAGCAACTGTTAAGAAGCAGCTCATAAATAGGTTTAAAGAGAATATTATTGAGGGTCAAACATACCAAATGTCATATTTTAGTGTTGTTCCAAACCAAGTCAACTATAGGGCAGTAGAACATGAGTTTAAGTTGGTTTTCCATAACCGTACAACTGTTATTTCTGTCCTTGATGATGCCATTCCCAAGACATGTTTCAGTTTTTGTCCATTTGATGAGCTCTTGAAAATGACTGAAGATTATGTTTACTTAGTTGATGTTATTGGTTTGCTAACTTCTGTCGGTGAAGAGAAAGAGTATGTGAAAGACGGCAAAGTGATGAAGAAGATTGTtcataccctggTTGTTGTGATCCAACTTGCCAAAGTTAAATTCTTTAGAGGACAAGTTGGTCTCCAAAATGTTATGCATGCTACTCGCTTGTTCTTTAATCCTGATTTGGCTGAAGTTGTTGATTTCAAAAACAGATATAGGATCAAAATAGCTGTTGAGGATGATAATCGACATGGTGTATTTGTCTTATTCGATCGTGAGGCTGCTTATTTATTGAAAAAATCATGTGCTGATCTATTTGACGAGGTTCAAAATGATGCAAGTGTTTTTTGTGGAGATAGTTATCCTGTGATGTTCCAACAATTGCTAGAGAAAAAATTGCTTCTTAAGATAGATACCAAGAGTGTTGGTGCTGAAAAATATTTCGGAACTTTCCATGTGAGAAGAGTCTGTGATGATGCTGCTATTATTGCTATGATTGAGTTGCCTAACTATGATGCAGATGATGAGCGTATTCCAGTGAAGGATGGTTATTTGGGAAAGATCCCTTCAAGTGACCATGAATATATTGTTGGCAAGAAGGATCTGTGTGAAGTGCTGGGTGAGGGTATCACTTCTGATGGGAATTGTTCCAATATGAAGACAAACTGCAGACCTTTTATTGATTTCCTTGGTGAAAGGATGCTGAAGTTTCTGGATTAG | 1056 | 0.3674 | MPPPFDSISKIHPHREAWRLKVKSNKIQATVKKQLINRFKENIIEGQTYQMSYFSVVPNQVNYRAVEHEFKLVFHNRTTVISVLDDAIPKTCFSFCPFDELLKMTEDYVYLVDVIGLLTSVGEEKEYVKDGKVMKKIVHTLVVVIQLAKVKFFRGQVGLQNVMHATRLFFNPDLAEVVDFKNRYRIKIAVEDDNRHGVFVLFDREAAYLLKKSCADLFDEVQNDASVFCGDSYPVMFQQLLEKKLLLKIDTKSVGAEKYFGTFHVRRVCDDAAIIAMIELPNYDADDERIPVKDGYLGKIPSSDHEYIVGKKDLCEVLGEGITSDGNCSNMKTNCRPFIDFLGERMLKFLD | 351 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip09g01917 | 351 | Gene3D | - | 23 | 85 | IPR012340 | - | |
| Aip09g01917 | 351 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 177 | 278 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
| Aip09g01917 | 351 | SUPERFAMILY | Nucleic acid-binding proteins | 93 | 187 | IPR012340 | - | |
| Aip09g01917 | 351 | Pfam | Domain of unknown function DUF223 | 25 | 105 | IPR003871 | - | |
| Aip09g01917 | 351 | PANTHER | BNAC07G49340D PROTEIN | 177 | 278 | - | - | |
| Aip09g01917 | 351 | SUPERFAMILY | Nucleic acid-binding proteins | 4 | 86 | IPR012340 | - | |
| Aip09g01917 | 351 | Gene3D | - | 171 | 279 | IPR012340 | - | |
| Aip09g01917 | 351 | PANTHER | BNAC07G49340D PROTEIN | 19 | 116 | - | - | |
| Aip09g01917 | 351 | CDD | RPA1_DBD_A_like | 23 | 80 | - | - | |
| Aip09g01917 | 351 | Gene3D | - | 87 | 142 | IPR012340 | - | |
| Aip09g01917 | 351 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 19 | 116 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip09g01917 | Aip-Chr9 | 58141226 | 58155871 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip09g01917 | 20 | 177 | Core DNA Replication Machinery Family | AT2G06510 | 26.020 | 2.58e-08 | 53.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip09g01917 | - | - | aip:107647213 | 345.51 |