Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01911 ATGGCTGCATCGTCTTCCTCAGCATCGCAATCGCATTTCACATATTCCAACGCCCCTACCTACTTCCCCGTTCCTTTCCACCTCCAGCAATCCGCCGCCACACCGGCGCATTACGCCGCTGCGATAATAACGCCGGAGGCGCTGGAGAGCGTGAAGGCGGCGATTGCGAGCAGCGAGGCGGAGAACAAGGTGGAGGCGAAGAAGAAAGCAGTTCCTCGAAAAGCTGCTGGTCAAACATGGGAGGATCCTATTCTTGCTGAGTGGCCCGAAGATGATTATCGGCTCTTTTGTGGTGACCTTGGTAATGAAGTGAATGACGATGTTCTTACCAAAGCATTTTCACGTTTCCCTTCCTTTAACATGGCACGGGTTGTCAGAGATAAACGGACTGGGAAAACAAAGGGCTATGGTTTTGTAAGCTTTGCCAGTCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCGATAAAATTAAGCAAGAGTAAGTGGAAGGAGAGAACAGATTTCGAGGCCCTGGAAAAACAGAAGAGCCAAACTCACAAGAAACCGAAGCTTCCCAGGAAGGGTGTTCTTCACAAGTGA 606 0.495 MAASSSSASQSHFTYSNAPTYFPVPFHLQQSAATPAHYAAAIITPEALESVKAAIASSEAENKVEAKKKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLTKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFASPSDLAAALKEMNGKYVGNRPIKLSKSKWKERTDFEALEKQKSQTHKKPKLPRKGVLHK 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01911 201 MobiDBLite consensus disorder prediction 177 201 - -
Aip09g01911 201 SUPERFAMILY RNA-binding domain, RBD 77 173 IPR035979 GO:0003676
Aip09g01911 201 SMART rrm1_1 94 167 IPR000504 GO:0003723
Aip09g01911 201 Gene3D - 46 192 IPR012677 -
Aip09g01911 201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 171 IPR000504 GO:0003723
Aip09g01911 201 PANTHER RNA-BINDING PROTEIN 42-LIKE 29 201 - -
Aip09g01911 201 CDD RRM_RBM42 87 169 IPR034215 -
Aip09g01911 201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 165 IPR000504 GO:0003723
Aip09g01911 201 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 29 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01911 Aip-Chr9 56913880 56919980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01911 95 178 Eukaryotic Initiation Factors Gene Family AT2G23350 30.952 5.45e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01911 K25079 - gmx:100807693 305.834