Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01884 ATGGATAATGAGATCGATGTTCCTCCGTTCTTTCTCTGCCCAATCTCGCTTGAAATCATGAAGGATCCTGTAACCGTCTCCGCCGGCATCACCTACGACAGAGAGAGCATCGAGACATGGCTCTTCTTCGGCAAGAACAAGAGCTGCTCCGTAACGAAGCAACAACTCTCTTCTTCTGATTTCTCCGATCTAACTCCAAACCACACTTTTCGCCGATCGATTCAGTCATGGTGTACCATCAACGCTTTCTATGGCATCGAAAGAATTCCCACATCTAAAGCACCGGTTAACAAAAACAAGATCTCAAAGCTCCTCAAAGATGAGGACATTGACGTAGAAGCTTGA 345 0.4609 MDNEIDVPPFFLCPISLEIMKDPVTVSAGITYDRESIETWLFFGKNKSCSVTKQQLSSSDFSDLTPNHTFRRSIQSWCTINAFYGIERIPTSKAPVNKNKISKLLKDEDIDVEA 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01884 114 PANTHER WDSAM1 PROTEIN 3 108 IPR045185 GO:0061630
Aip09g01884 114 CDD RING-Ubox_PUB 11 54 IPR045210 -
Aip09g01884 114 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Aip09g01884 114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Aip09g01884 114 SUPERFAMILY RING/U-box 4 86 - -
Aip09g01884 114 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Aip09g01884 114 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 108 - -
Aip09g01884 114 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01884 Aip-Chr9 54176105 54176449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01884 1 107 U-box Gene Family AT2G35930 68.224 1.43e-50 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01884 - - ahf:112775650 235.343