Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01880 ATGGAGGAGACCTTCCTCATTGACGATGTCAAAGAGAAGCTCTGTTTCGTCTCCCTTGATGTGCCACGCGATCTCCGCCTTGCCAGGGAAAGTGGAAAAGAAAATCTCTTCAGGTGCACATATGTGCTTCCTGATGGTATCACATACACCAAGGGTTTTGTTAAGCATCCAGAGCGAATGCACAACTATCTTGCCTTGAAGGATGGCACTTGTGCCTTTCCTCCTCTTCCAGAGGAAACAAAGGGGAATATGAACCGCCCGGAAATTGCTGAGATGCCTCAAGACCGAAACGGAATTGATCTATCGAAAAATGAATTCGACTTGACAAAAGAACGGTTTCTTGTCCCTGAGATGATCTTCCAGCCTGCCAATTTGGGTATGAATGAAGCTGGGCTAGCAGAATGTATTGTTCGAGCTGTCAATTCGTGCCATCCACATCTCCACCCTGTACTCTATGAAAGCATAATTTTAACCGGCGGAAGCACGCTGTTTCCTCAGTTTTCTGAGAGATTAGAGAAGGAGCTCCGACCACTAGTTCCCGATGACTATCATGTGAAGATAACTACTCAAGAAGATCCCATACTAGGTGTTTGGCGAGGAGGATCTCTGTTGGCGTCAAGTCCAGATTTTGAAGCAATGTGTGTAACTAAGTCTGAGGAAAGGAAAATCTCTAATCTCTTCAGGTGCACATATGTGCTTCCTGATGGTATCACATACACCAAGGGTTTTGTTAAGCATCCAGAGCGAATGCACAACTATCTTGCCTTGAAGGATGGCACTTGTGCCTTTCCTCCTCTTCCAGAGGAAACAAAGGGGAATATGAACCGCTCGGAAATTGCTGAGATGCCTCAAGACCGAAACGGAATTGATCTATCGAAAAATGAATTCGACTTGACAAAAGAACGGTTTCTTGTCCCTGAGATGATCTTCCAGCCTGCCAATTTGGGTATGAATGAAGCTGGGCTAGCAGAATGTATTGTTCGAGCTGTCAATTCGTGCCATCCACATCTCCACCATGTACTCTATGAAAGCATAATTTTAACCGGCGGAAGCACTCTGTTTCCTCAGTTTTCTGAGAGATTGTAA 1086 0.4521 MEETFLIDDVKEKLCFVSLDVPRDLRLARESGKENLFRCTYVLPDGITYTKGFVKHPERMHNYLALKDGTCAFPPLPEETKGNMNRPEIAEMPQDRNGIDLSKNEFDLTKERFLVPEMIFQPANLGMNEAGLAECIVRAVNSCHPHLHPVLYESIILTGGSTLFPQFSERLEKELRPLVPDDYHVKITTQEDPILGVWRGGSLLASSPDFEAMCVTKSEERKISNLFRCTYVLPDGITYTKGFVKHPERMHNYLALKDGTCAFPPLPEETKGNMNRSEIAEMPQDRNGIDLSKNEFDLTKERFLVPEMIFQPANLGMNEAGLAECIVRAVNSCHPHLHHVLYESIILTGGSTLFPQFSERL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01880 361 Gene3D - 205 219 - -
Aip09g01880 361 Gene3D Actin; Chain A, domain 4 291 327 - -
Aip09g01880 361 SMART actin_3 2 230 IPR004000 -
Aip09g01880 361 PANTHER ACTIN 229 361 IPR004000 -
Aip09g01880 361 Pfam Actin 223 361 IPR004000 -
Aip09g01880 361 Pfam Actin 2 219 IPR004000 -
Aip09g01880 361 Gene3D Actin; Chain A, domain 4 62 137 - -
Aip09g01880 361 PANTHER ACTIN 1 207 IPR004000 -
Aip09g01880 361 SUPERFAMILY Actin-like ATPase domain 223 361 IPR043129 -
Aip09g01880 361 Gene3D - 138 204 - -
Aip09g01880 361 Gene3D - 328 361 - -
Aip09g01880 361 PANTHER ACTIN-RELATED PROTEIN 6 1 207 IPR030054 GO:0005634|GO:0006338
Aip09g01880 361 PANTHER ACTIN-RELATED PROTEIN 6 229 361 IPR030054 GO:0005634|GO:0006338
Aip09g01880 361 SUPERFAMILY Actin-like ATPase domain 3 219 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01880 Aip-Chr9 53696294 53700169 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01880 298 361 Cytoskeleton Gene Families AT5G09810 37.500 9.97e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01880 K11662 - gmx:100819827 357.836