Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01877 ATGGCATCATTTAAAAAGTGTAGCCTTAGAATTGAAGTCACCCTCCCAGTAGAGAAGAAAACCCTCCTGCACTCCTGCACCGCGAGAAGGAAACCCTGCCTCCTGCACCGTGCGAAGAGCGTGAAGCCTCACTGTCGCGAAGATCATCGCACCCCAGTCCCCACTCACCACTCAGCGCCACACCGTCGTGAAGATCGTGAAGCTTACACCATCGTGAACCCTCCTACTCTGATCGTCGCGCGCCGCCCATACCACCGTCATGAACCCTCCTACACTGATCTCCGCACCACTCATGACTTCGCCACTCACCGTCACCTGCGCCCTCCTGCATTGATCATCAGCTACGCCCTCACCATCGTCATCTCTACGCTCAGCTCGTCCTCTCTGCGCTCACATCGTCGAGAAGGTGCTGTGTTAAGGAAGAAACAAATTTTTTTCTGCAACCCAGCATGTTTAAGGAGAGTCGCAAGCTTCTACTGCTGTCTCTGGACGAGAAATCCACATGCTACTGTTAGGGAGGGTGGGACTGTTTCGGCTATGACATTAGATATGAGAATACTTCTTGGGGGCAAGAAAATGAGGGATACTGTTTGCATAGCTCTTGTTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTGGAATTTGCGGGTTCGTCTTGGAGATGTTGTGTCCGTGCACCAGTGCCCTGATGTGAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCTTACTTCTTGGAAGCTTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGTGGAGGGATGAGAAGTGTGGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTACTGTGTGGTTGCTCCAGATACTGAAATCTTCTGTGAGGGGGAGTCTTTGAAAAGAGAGGATGAAGAGATGCTGGATAAAGTTGGATATGATGATGTGGGTGGAGTCAGGAAACAAATGGCACAAATTCGTATTCTACTTTATGGACCCCCTGGTTCTGGGAAGACACTGATAGCAAGAGCTGTTGCTAATGAAACGGGAGCTTTCTTCTTTTGTATAAATGGACCGGAGATTATGTCCAAACTGGCAGGAGAGAGTGAAAGCAATCTGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTTATGGATGGATTGAAATCTCATGCTCATGTTATCGTTATTGGAGCTACCAATCGCCCAAACAGCATTGACCCAACATTGAGAAGGTTCGGTAGATTTGATAGGGAAATTGATATTGGTGTTCTTGATGAAGTTGGCCGACTTGAAGTTCTTCATATACACACTAAAAACATGAAGCTCTCTGATGATGTAAGTTTCATTGTCTCTTAA 1515 0.4647 MASFKKCSLRIEVTLPVEKKTLLHSCTARRKPCLLHRAKSVKPHCREDHRTPVPTHHSAPHRREDREAYTIVNPPTLIVARRPYHRHEPSYTDLRTTHDFATHRHLRPPALIISYALTIVISTLSSSSLRSHRREGAVLRKKQIFFCNPACLRRVASFYCCLWTRNPHATVREGGTVSAMTLDMRILLGGKKMRDTVCIALVDDTCEEPKIRMNKVVRWNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGESLKREDEEMLDKVGYDDVGGVRKQMAQIRILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSHAHVIVIGATNRPNSIDPTLRRFGRFDREIDIGVLDEVGRLEVLHIHTKNMKLSDDVSFIVS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01877 504 Pfam Cell division protein 48 (CDC48), N-terminal domain 193 235 IPR003338 -
Aip09g01877 504 Gene3D - 345 476 IPR027417 -
Aip09g01877 504 Gene3D - 237 334 - -
Aip09g01877 504 Gene3D - 477 501 - -
Aip09g01877 504 PANTHER AAA-FAMILY ATPASE 346 500 - -
Aip09g01877 504 SMART CDC48_2_2 254 320 IPR004201 -
Aip09g01877 504 Pfam Cell division protein 48 (CDC48), domain 2 256 316 IPR004201 -
Aip09g01877 504 Pfam ATPase family associated with various cellular activities (AAA) 346 475 IPR003959 GO:0005524|GO:0016887
Aip09g01877 504 Gene3D - 180 236 - -
Aip09g01877 504 PANTHER AAA-FAMILY ATPASE 185 347 - -
Aip09g01877 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 499 IPR027417 -
Aip09g01877 504 MobiDBLite consensus disorder prediction 44 66 - -
Aip09g01877 504 SMART CDC48_N_2 164 237 IPR003338 -
Aip09g01877 504 SUPERFAMILY Cdc48 domain 2-like 236 327 IPR029067 -
Aip09g01877 504 SMART AAA_5 342 478 IPR003593 -
Aip09g01877 504 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E 185 347 - -
Aip09g01877 504 SUPERFAMILY ADC-like 185 234 IPR009010 -
Aip09g01877 504 CDD AAA 346 475 - -
Aip09g01877 504 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E 346 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01877 Aip-Chr9 53574689 53580320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01877 328 499 Calmodulin-binding Proteins AT3G56690 43.147 4.37e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01877 K13525 - aip:107633205 587.8