Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01835 ATGGGGTGTGTGATTAGCCGAGAGGTGCAATCGGGGATTGTCTCTGAGGTGAAGGAGGAGAAGGGTTTGAGTGCTGAGTTGAGCAGGAAGGTTGGTGATGTGTCTACAAGCAATATCGATGTAGGCGAGGTGGAGATTCAGAATGGCGAGAAGCAGAGGGAAAAAGAAGAGAATGGCAGCAATGATGAGCAGCCTCGGAAAGCGAGGGGCGAAAGAAGAAGATCAAAGCCAAACCCAAGGTTGAGTAATCCCCCTAAGAATTTGAGGGGGGAGCAAGTAGCAGCTGGGTGGCCACCGTGGCTTACGGCAGTTTGTGGGGAAGCCCTCAGTGGCTGGATTCCTCGAAAGGCTGACACATTTGAGAAAATTGATAAGATTGGTCAAGGAACGTATAGTAATGTGTACAAAGCTAAGGACATGTTGACTGGTAAGATCGTTGCATTGAAGAAGGTCCGATTTGACAATTTGGAACCTGAGAGTGTCAAATTCATGGCAAGGGAGATTATTATTTTGCGAAGATTGGATCACCCCAATGTTGTAAAGCTAGAAGGTTTAGTTACATCAAGAATGTCCTTGAGTTTGTATCTCGTTTTTGATTACATGGTGCATGATTTAGCTGGTCTTGCTGCAAGCCCTGAAATAAAGTTTACAGAACCTCAGGTCAAATGTTACATGCATCAATTGTTATCAGGTCTTGAGCACTGTCATAATCGAAATGTGCTTCATCGTGATATTAAAGGATCAAATCTACTTATCGACAATGATGGAGTACTTAAGATTGCTGATTTTGGTCTTGCATCATTCTTTGATCCGAACCGCAAGCAACCCATGACTAATCGTGTAGTAACCCTTTGGTATAGACCTCCGGAGTTGCTTCTTGGTGCCACAGATTATGGTGTGGGCATTGACCTTTGGAGTGCTGGTTGCATTCTAGGAGAGTTATTGGCTGGGAAACCTATTATGCCTGGTCGTACAGAGGTGGAACAATTGCATAAGATATACAAACTTTGCGGTTCGCCTTCTGATGAGTATTGGAAGAAATCAAAGTTGCCTAATGCTACCTTGTTTAAACCTAGAGAGCCATATAGGAGATGCATAAGAGAGACATTTAAAGATTTTCCACCTTCTGCACTAGCCCTTATCGACACTCTTCTTGCAATTGATCCCGCTGAACGGAAGACTGCCTCATATGCTTTAAGAAGTGAGTTCTTTACCACGGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAACCAAGGAAATGGATGCTAAACGACGGGATGATGAAGCAAGGAGATTAAGAGCTGCTGGAAAAGCTCATGGGGATGGTGCAAAGAAGCATCGTACACGTGAACGTACTGCAAGAGCTATTGCTGCTCCTGAAGCCAATGCCGAGCTTCAACCCAACATTGATCGAAGGCGTCTCATCACTCATGCGAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCACCTCATGAAGACGGGCAACTTGGATACCCGTTGGGATCTTCAAACCATATTGATCCAGACATTGTCCCTCCTGATGTCTCTTTTGTTTCAACCACATACAACTACACAAAGGAACCATTCCAGGCATGGTCCGGTCCGATCGGTGTGCCAAAGCAGAAGAAACACAATAATGCAGGTGATGCATTGGATTTATCGAAACCACATAAAAGTGCCCTCAAGGACAAAGTTAAAGGAAAGAAAATCGTAGTTTAG 1734 0.4446 MGCVISREVQSGIVSEVKEEKGLSAELSRKVGDVSTSNIDVGEVEIQNGEKQREKEENGSNDEQPRKARGERRRSKPNPRLSNPPKNLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREIIILRRLDHPNVVKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPEIKFTEPQVKCYMHQLLSGLEHCHNRNVLHRDIKGSNLLIDNDGVLKIADFGLASFFDPNRKQPMTNRVVTLWYRPPELLLGATDYGVGIDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYRRCIRETFKDFPPSALALIDTLLAIDPAERKTASYALRSEFFTTEPYACDPSSLPKYPPTKEMDAKRRDDEARRLRAAGKAHGDGAKKHRTRERTARAIAAPEANAELQPNIDRRRLITHANAKSKSEKFPPPHEDGQLGYPLGSSNHIDPDIVPPDVSFVSTTYNYTKEPFQAWSGPIGVPKQKKHNNAGDALDLSKPHKSALKDKVKGKKIVV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01835 577 CDD STKc_CDK9_like 120 404 - -
Aip09g01835 577 PANTHER CELL DIVISION PROTEIN KINASE 47 549 - -
Aip09g01835 577 Gene3D Phosphorylase Kinase; domain 1 107 202 - -
Aip09g01835 577 SUPERFAMILY Protein kinase-like (PK-like) 115 411 IPR011009 -
Aip09g01835 577 Gene3D Transferase(Phosphotransferase) domain 1 203 443 - -
Aip09g01835 577 Pfam Protein kinase domain 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g01835 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Aip09g01835 577 MobiDBLite consensus disorder prediction 19 92 - -
Aip09g01835 577 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Aip09g01835 577 MobiDBLite consensus disorder prediction 46 78 - -
Aip09g01835 577 PANTHER OS01G0367700 PROTEIN 47 549 - -
Aip09g01835 577 MobiDBLite consensus disorder prediction 540 571 - -
Aip09g01835 577 ProSiteProfiles Protein kinase domain profile. 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g01835 577 SMART serkin_6 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g01835 577 MobiDBLite consensus disorder prediction 550 571 - -
Aip09g01835 577 MobiDBLite consensus disorder prediction 414 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01835 Aip-Chr9 49589875 49596645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01835 112 442 Core Cell Cycle Gene Families AT5G10270 51.585 6.87e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aip09g01835 Pkinase 6.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01835 K08819 - gmx:100817289 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01009 06 14497329 14515505 Aip09g01835 09 49589875 49596645 ECH
Aip09g01835 09 49589875 49596645 Aip09g01835 09 49589875 49596645 ECH
Aip06g01009 06 14497329 14515505 Aip09g01835 09 49589875 49596645 PCT