Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01821 ATGTGTGTCGCCACCCCAGCTTCTCGTCATTGCCGAGAAAGGACTGTCAGGCTCTCGCTCAGTTCCGACGGTGCAACCAGCTCTCCCCACAGGTGGGGCATCGGGCTTTCACCCTCCGAAGAGGATGGCACCATAATTAGAGCTCACGCTCGGTTTGGCAACAAGTGGGCCATCATAGCCCGACTCTTTTTCGGCAGAACCGACAATGCCATTAAGAACCACTGGAACTCCACCCTCAAACGCAAGTGCGCCTCCATGGACCCCATCGACGATCCTCACTTCGCGCAGCCACTCAAATGTTTCGTTAGCGCCGGCGCCGCCATACTTGTGTCAACGGTGGTGGTGAGGTACTCGTTGCCGACATTGATGGCGGTGACGGAGATGGCGGGCAGGAAGGGGAGGATGCGGATGGAGAGCCAGGAGTGTGCAGTGGAGATGTCGGAGCTGATGTTGGCGACGCGGGAGTTCTCGAGGGAGACAATGAAATCAATGGCAAAAGCTTGGAGGATTCAGGAGAAAACCCAATCCATTCAGGTGGTGAAGTTAACGGCAGTGATGACTGATGGTGATGGTGGTGGTGGTGCTGTTGAATCGCGATCGACATCGATGGAGGAGTGTGCAGCCGAAAGGGTTAGGGTGACGGCTGAGGAGGAGGAGCCAGATCTCAGTGAAAATTTGGGGTTGCAGGATGAAACTCGTGATGAACTTGGTGCAGAGTTCCACAAAAAGTTAAATTTGAAGAATGAGGATGAAATGGTAGCTGAAAATGAGAAAAAAGATTCGGACTTTGTAGCTGGTAGTGGAGAATATGGTGGTGAGGAATTGGGTGGTGAAGGTGGTTGTGCCCCGGAAACAGAGAGTGAGGTTGATAAGGTAAGTGGAGATTTTGATGTTAATGGTGATGGTAATGGTGATGATGAAGTTGAAGTCGAATGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAACAGTGGTAGAGTTCAACAGCAATATCTACTGAGGCCTGATGCTGAAGATTGTGCTTTCTATCTTAAAACTGGAATTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAACCAGCAACAGAAAAAAAGAAAAAAAACTGGAGGCTTTTCCTTCTGCATTGTTTTTCATGAGATTCTCTTGTTGATGCGATCCTAA 1182 0.4907 MCVATPASRHCRERTVRLSLSSDGATSSPHRWGIGLSPSEEDGTIIRAHARFGNKWAIIARLFFGRTDNAIKNHWNSTLKRKCASMDPIDDPHFAQPLKCFVSAGAAILVSTVVVRYSLPTLMAVTEMAGRKGRMRMESQECAVEMSELMLATREFSRETMKSMAKAWRIQEKTQSIQVVKLTAVMTDGDGGGGAVESRSTSMEECAAERVRVTAEEEEPDLSENLGLQDETRDELGAEFHKKLNLKNEDEMVAENEKKDSDFVAGSGEYGGEELGGEGGCAPETESEVDKVSGDFDVNGDGNGDDEVEVECDEEVEKKKDRNSGRVQQQYLLRPDAEDCAFYLKTGICKFGFNCKFNHPLGRRKNQQQKKRKKTGGFSFCIVFHEILLLMRS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01821 393 Pfam Myb-like DNA-binding domain 40 78 IPR001005 -
Aip09g01821 393 PANTHER MYB PROTEIN-RELATED 39 179 - -
Aip09g01821 393 SMART c3hfinal6 334 361 IPR000571 GO:0046872
Aip09g01821 393 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 39 179 - -
Aip09g01821 393 SMART sant 33 81 IPR001005 -
Aip09g01821 393 ProSiteProfiles Zinc finger C3H1-type profile. 334 362 IPR000571 GO:0046872
Aip09g01821 393 Gene3D - 38 93 - -
Aip09g01821 393 MobiDBLite consensus disorder prediction 260 289 - -
Aip09g01821 393 Gene3D - 306 370 - -
Aip09g01821 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 83 IPR017930 -
Aip09g01821 393 CDD SANT 40 79 IPR001005 -
Aip09g01821 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 338 360 IPR000571 GO:0046872
Aip09g01821 393 SUPERFAMILY Homeodomain-like 40 84 IPR009057 -
Aip09g01821 393 SUPERFAMILY CCCH zinc finger 336 363 IPR036855 GO:0046872
Aip09g01821 393 ProSiteProfiles Myb-like domain profile. 40 79 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01821 Aip-Chr9 49026359 49033467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01821 31 121 MYB Transcription Factor Family AT5G67300 52.475 1.04e-22 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip09g01821 Myb_DNA-binding 3.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01821 K09422 - adu:110280340 186.808