Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01802 ATGGCCTCTCTTGGAAGTAGTCCAGGTGGTGGCAACAAGAAAAGGAAGCGATCATCATCCAACAATGGTGACAATAATGGCAGCTGCTGTAACTGCCGAAGGATTCAATGCATGAACCTCTTCTGTGTATGCCTTCGTGCCGGAGACTTTTGCAACGATTCTTGTTCTTGCAATTGGTGCTTGAATATTTGGGAGAATAAGGATTTTGTGGACGAGAAGAAAAAGGAAATCGAATTGCGTGATCCACACGCATTTCAACCCAAAATTATTTTTGGTGAGAACGAAACAGCAGCATGGCACAGAAAAGGTTGCAACTGCAGAAAGTCAAAGTGCAAGAGCAACTATTGCGCTTGCTTCCGTGCTGAAGTTGGTTGTTCTAGTCGATGTCGATGTGAGGGTTGCATGAATAAGTATGGAAATGGAATCATCAAAGATGAACAAGAACAATGTGTTTTGACTAATAATAATAATGGCGGCAATGACGTAACGGTGGATAATGAATCACCATCTTCTCAATCTCATCATCCAGTTGCCGACAATGATTTTTTTGATCAGGTTTAA 561 0.4171 MASLGSSPGGGNKKRKRSSSNNGDNNGSCCNCRRIQCMNLFCVCLRAGDFCNDSCSCNWCLNIWENKDFVDEKKKEIELRDPHAFQPKIIFGENETAAWHRKGCNCRKSKCKSNYCACFRAEVGCSSRCRCEGCMNKYGNGIIKDEQEQCVLTNNNNGGNDVTVDNESPSSQSHHPVADNDFFDQV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01802 186 MobiDBLite consensus disorder prediction 161 186 - -
Aip09g01802 186 MobiDBLite consensus disorder prediction 1 25 - -
Aip09g01802 186 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 29 62 IPR005172 -
Aip09g01802 186 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 102 137 IPR005172 -
Aip09g01802 186 ProSiteProfiles CRC domain profile. 26 139 IPR005172 -
Aip09g01802 186 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 12 142 IPR044522 GO:0003700
Aip09g01802 186 MobiDBLite consensus disorder prediction 161 178 - -
Aip09g01802 186 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 12 142 - -
Aip09g01802 186 SMART CXC_2 25 66 IPR033467 -
Aip09g01802 186 SMART CXC_2 99 140 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01802 Aip-Chr9 47917671 47918231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01802 1 139 CPP Transcription Factor Family AT3G22760 42.484 2.21e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Aip09g01802 TCR 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01802 K21776 - ahf:112771246 192.586