Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01789 ATGGACAACGTGGTTGATTCTCTAAACAATGCCTATCAAGATTTTATTGCTGCTGCGTCGACTGTGCTTGAAGCCAAAGAAAGTGCAGGTGCCCAGAAAACAACAGCAACTGATGTTGCTCTAGAGAACTTCAAGCAGAAGTGGGAATTATTTAGGGTGGCATGTGATCAAGCCGAGGAGTTTGTGGAGTCTTTGAAGCAGAGGATAGGATCAGAGTGTCTGGTAGACGAGGCGACAGGTGCAGGAAAACCCGGACAAGCTACCATGACTGGTCTTCCTCCCATCAGCGCAGTTCGGCTGGAACAAATGAGTAAAGCGGTCCGGTGGCTAGTGATTGAATTGCAGAATGGATCTGGAGCCGCTGCTGCTAATTCATCCCAATCCCATGCCTCAGCTCCTTTTGATGCCAGgggtgttcatgggccagatgaaacaagGAAGAAGAAATCTTCACAGAAGAAGCTCGACGAGAAGAAAGAACCTCTCCAATTCGAAGAGATGGCAATAAGATTGCCGTTTTGGATGATGTCGTCAACGCTTTCAATTTATCATCCATGGAGGAAAAAGATCCCGAAAAAGGCTTCGGAAATCTTAAGGAAGAAGGGTATGGGGGCTTTTGCCCTTCTGCTTCCCATCAACGTCGCTCGTTCCTTGGTCTTCCCCTTCCACGATAGCTCGCTCTCTGATCTTCTCCTTGCGTCGTGGTCATTTTCTAATCCTTTCCATTCGCGGGATTGCTCGTTCTCCTCTGTGTCGTGCTTGTTCTCTGATCGTCGACACCGCAACACGCTGCCGCCGCCGCCGCTACACTCGGGTCCACCACTTCATTGTTTTCTGTCGCCTCTCTGTTCCTCTTCTTCACCAGCGACACTGATCTCTATCCTTCTCCCTCCACCTTTGCCTCTGCCACTTACTCCTTTAAGTTATGTTGCACCGGAGTATGCATGCACTGGAATGCTGACTGAGAAGAGTGATGTTTATAGCTTTGGGATACTTATTATGGAAATAATTACCGTAAGAAGTCCTGCTGATTATAGTAAACCCCAAGGAGAGGTTAATTTAATTGAGTGGTTGAAAGCTATGGTTGACAATAGAAAATCAGAGGAACTCATTGATCTGAACCTTCTTGAAAATCCATCTTCAAAGGCTCTTAAGCTTTGCTCTGTTGGTTGCTCTTAA 1179 0.458 MDNVVDSLNNAYQDFIAAASTVLEAKESAGAQKTTATDVALENFKQKWELFRVACDQAEEFVESLKQRIGSECLVDEATGAGKPGQATMTGLPPISAVRLEQMSKAVRWLVIELQNGSGAAAANSSQSHASAPFDARGVHGPDETRKKKSSQKKLDEKKEPLQFEEMAIRLPFWMMSSTLSIYHPWRKKIPKKASEILRKKGMGAFALLLPINVARSLVFPFHDSSLSDLLLASWSFSNPFHSRDCSFSSVSCLFSDRRHRNTLPPPPLHSGPPLHCFLSPLCSSSSPATLISILLPPPLPLPLTPLSYVAPEYACTGMLTEKSDVYSFGILIMEIITVRSPADYSKPQGEVNLIEWLKAMVDNRKSEELIDLNLLENPSSKALKLCSVGCS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01789 392 MobiDBLite consensus disorder prediction 139 158 - -
Aip09g01789 392 Gene3D Transferase(Phosphotransferase) domain 1 290 390 - -
Aip09g01789 392 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32 1 138 IPR033244 GO:0006355|GO:0009631|GO:0010150|GO:0016592|GO:0048364
Aip09g01789 392 SUPERFAMILY Protein kinase-like (PK-like) 305 383 IPR011009 -
Aip09g01789 392 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32 1 138 - -
Aip09g01789 392 MobiDBLite consensus disorder prediction 122 158 - -
Aip09g01789 392 Pfam Protein tyrosine and serine/threonine kinase 305 349 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01789 Aip-Chr9 47036145 47040742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01789 307 392 Receptor kinase-like Gene Family AT4G02010 40.909 2.06e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Aip09g01789 PK_Tyr_Ser-Thr 1.9e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01789 - - ahf:112778339 374.785