Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01779 ATGGTGGCCGGAGACAGAGCTGTTAGTGCTTCCAAGAGCCACAGTCAAGCCGAGAAGCGGCGCAGGGACCGAATCAATGCACAGCTTACAAGTTTAAGGAAACTAATTCCAAAATCTGATAAGGAATTTGACTTCAGGGCTCATGATTCTGCATTCAAAGACAGATACCTACAGTTTCAAAATGTGAGGGTGAGGTTCATACCAACTGAGAAGAAAGACATCCGAGATATATCCAGAGGCAGAAGTAATAGCTTTATCGCCAAAGTCGCTGGTGGTGAAGAACCGTTTCGTGTGCGAGATATGCAAGAAAGGGTTCTAGAGGGACCAGAACCTGCAGTTGCACCGGTGAGGGCACAACCTGCCGTGGAAGCTTCGGCAGAGGGAGAAGGAGGTGGTGGTGGTACCGTGGTAGACGCGGGTTGA 423 0.4965 MVAGDRAVSASKSHSQAEKRRRDRINAQLTSLRKLIPKSDKEFDFRAHDSAFKDRYLQFQNVRVRFIPTEKKDIRDISRGRSNSFIAKVAGGEEPFRVRDMQERVLEGPEPAVAPVRAQPAVEASAEGEGGGGGTVVDAG 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01779 140 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 1, CHLOROPLASTIC 37 108 - -
Aip09g01779 140 PANTHER - 37 108 - -
Aip09g01779 140 Gene3D - 4 75 IPR036638 GO:0046983
Aip09g01779 140 MobiDBLite consensus disorder prediction 1 26 - -
Aip09g01779 140 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 41 IPR036638 GO:0046983
Aip09g01779 140 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 67 IPR011598 GO:0046983
Aip09g01779 140 MobiDBLite consensus disorder prediction 109 140 - -
Aip09g01779 140 MobiDBLite consensus disorder prediction 12 26 - -
Aip09g01779 140 Pfam Helix-loop-helix DNA-binding domain 12 38 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01779 Aip-Chr9 46313733 46315519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01779 5 41 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 67.568 5.39e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip09g01779 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01779 - - gmx:100813624 79.7221