Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01747 ATGACCTCCATTTTGCATAACCGTCCAAATGACGCAATTATCCTTCTCTCCTTCTTTCTCTTTCACCTGCTTCTCTTCTTTCCCTTCACCGGAGCACAATCCGATAACAACAACCAAAACAACAATTACTACAACCGTTTCAGCCCTTCCATGGCGATCATAGTTGTAATCCTCGTCTCCGCACTCTTCCTCATGGGATTCTTCTCCATCTACATCCGCCACTGCTCCGACTCTCCTTCCGCCAGCATCCGCCACCTTGTCGCCACCGGCAGATCCCGCCGTGGTCACCGAGGTCTCGACCCTGCCGTCATCGACTCGTTCCCAACCTTAGAGTACTCAGTCGTAAAAATCCACAAGATTGGAAAGGGAGCACTCGAATGCGCAGTGTGCCTCAACGAGTTTGAAGACACTGAAACGCTGCGTTTGATTCCCAAATGCGACCACGTGTTCCACCCTGAGTGTATCGACGAGTGGCTCGAGTCTCACACCACGTGTCCGGTTTGCAGAGCCGACCTCCTCCCACAACCGGGAGACTCCGTACGCGGCGCCGCCGCCGTCGTGATTCCGGAGTTGGCAAACGACGAGTTGTCCTCGCCGCGCAATTTGGAATCGCGGAACCAAAGCGACGTCGTAGTTGCTGTGGAGCAAGAAAGTGAGAATCTGGAGAGTAATAAGAATGAAAGGGTAAGTGTTGATGAACGGGAAGTATTGTGTTTGAATATGAACCAGGCGTTGAATTTGAACCGCACCAGGGGTTCCCGGTCGGGGAGGCCGAGGAG 779 0.5315 MTSILHNRPNDAIILLSFFLFHLLLFFPFTGAQSDNNNQNNNYYNRFSPSMAIIVVILVSALFLMGFFSIYIRHCSDSPSASIRHLVATGRSRRGHRGLDPAVIDSFPTLEYSVVKIHKIGKGALECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLESHTTCPVCRADLLPQPGDSVRGAAAVVIPELANDELSSPRNLESRNQSDVVVAVEQESENLESNKNERVSVDEREVLCLNMNQALNLNRTRGSRSGRPR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01747 259 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Aip09g01747 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 174 IPR013083 -
Aip09g01747 259 SUPERFAMILY RING/U-box 121 176 - -
Aip09g01747 259 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 259 - -
Aip09g01747 259 Pfam Ring finger domain 126 169 IPR001841 -
Aip09g01747 259 CDD RING-H2_EL5_like 126 169 - -
Aip09g01747 259 PANTHER RING FINGER DOMAIN-CONTAINING 16 259 - -
Aip09g01747 259 SMART ring_2 127 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01747 Aip-Chr9 43443792 43444570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01747 29 175 Rapid Response to Elicitors AT3G05200 59.868 1.71e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01747 K10664 - gmx:100810865 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00976 06 13799236 13800696 Aip09g01747 09 43443792 43444570 PCT