Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01725 ATGGATCCTCACCAAGGTCATAACCAAAACCCATCCATGGGAGTTGGTGGCAGCGGAGCACAATTCCCCTATGGTTCCAATCCATACCAGCCCAACCAAATGACTAGCTCACCTGGGATGGTTGTTCCACCAATTGGAACCATTCAATCCACTGGTCAGCCTGCTACAGCTCAATTGGGCCAACATCAACTGGCTTATCAACATATTCATCAACAACAACAGCAGCAACAGCAGATGCAACTTCAGCAACAACTTCAGTCCTTTTGGGCTAACCAATACCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCCCTGGCAAGGATCAAGAAGATCATGAAGGCTGATGAAGATGTCAGGATGATATCGGCCGAGGCGCCGGTCATATTTGCGAGGGCATGCGAAATGTTCATACTAGAGTTGACATTGCGATCATGGAATCACACTGAAGAGAACAAGAGGAGGACTCTTCAAAAGAATGACATTGCTGCTGCAATTACAAGAACCGATATCTTCGATTTCTTGGTTGATATTGTGCCCAGGGAGGATCTGAAAGATGAAGTGCTTACATCAGTGCCAGGAGGAACAATGGCTGTTCCAGGGCCAGCTGATTCTATTCCTTACTGCTATATGCCGCCACAGCATGCACAAGTTGGAGCTGCAGGAGTCATGATGGGTAATCCTGCAATGGACCCCAATTTATATGCTCAGCAGCCTCATCCCTACATCGCACCGCAAATGTGGCCACAGCCACCAGAGCAACAACAGTCGCCTTCGGATCATTGA 795 0.4767 MDPHQGHNQNPSMGVGGSGAQFPYGSNPYQPNQMTSSPGMVVPPIGTIQSTGQPATAQLGQHQLAYQHIHQQQQQQQQMQLQQQLQSFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSVPGGTMAVPGPADSIPYCYMPPQHAQVGAAGVMMGNPAMDPNLYAQQPHPYIAPQMWPQPPEQQQSPSDH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01725 264 SUPERFAMILY Histone-fold 76 178 IPR009072 GO:0046982
Aip09g01725 264 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 264 - -
Aip09g01725 264 MobiDBLite consensus disorder prediction 1 16 - -
Aip09g01725 264 MobiDBLite consensus disorder prediction 23 39 - -
Aip09g01725 264 Gene3D Histone, subunit A 66 184 IPR009072 GO:0046982
Aip09g01725 264 MobiDBLite consensus disorder prediction 1 39 - -
Aip09g01725 264 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 106 169 IPR003958 -
Aip09g01725 264 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01725 Aip-Chr9 41985755 41986549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01725 17 263 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.134 1.24e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aip09g01725 CBFD_NFYB_HMF 5.9e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01725 K08066 - gmx:100527803 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00970 06 13695833 13698567 Aip09g01725 09 41985755 41986549 PCT