Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01703 atggattggagaaaggttcgcaccaaggacaaggtctataatgaatgtgtaaaggaaatgttccattttgatgaagatagtagaggaattatcaagcataatttttcgattatcacaatagtgaagagacaaaggagaaatgtaagaaaaatgttgagaatcgatcaaagcaactttacacccatactggcggatcgaaaagcctgtcggaacgacaaggaaggagagttgtatctcttaacgcacaaaagacctaatggctcctatatccatgatgcagctcgggctattggagaaagaattgaggctattgagcaacgtgatgaatcctctagactgttgtctcagaatgattcgcttgctcaagctctcggaaaggagcactcggatagggtgcgtggcatgggtttggggccgacttctagtcaagtcttcgGAACAATATTGTTAATTTCCTCACCAACCCTCATTCTCCGCTGCCGGCATCACGGTTGCGCCGCCGTCACTCCGTTTGCTCGCGCCGCCTGTCGCTCATTCTCAGCTGACGTGGATGCAAAGATAGCGCAAGCTGGAGTACCAAAGAAGAGGACGTTCAAGAAGTTCAGTTTCAGAGGCGTGGATCTCGATGCACTCTTGACATGTGCACCAATGAACTCGTTAAACTCTTCACTATTCGTGCTCGCAGAAGGTTTCAGCGCGATTCTTTGCTATTTTCATTCCAAGTACAAGTCAAAGATATCTATCACCTATACTGAAATTGGCACATCTTGCAAAATCCCTTATGGCCATGGATCCATTTATAGATTCTTCAGCCAAGATGTTGTAAAAGTTAGGGATATCATCATCAAAGACCAATTATTCGCTGAAAGTACAAAGGAAGGATCATTGGCCCTTTTAGCTTTGCATGATGATGGGATACTTGGACTTGAATTCGAAGATATTTCAATTGGGGAAGTCACACCAGTGTGGTACAATATAATAGATCAAGGGTACATATATCAAAATGTTTTCTCTCTTTGTCTAAATAAAGATCCAATGGCAGAGATAGAGGGTGAGATTGTCATTGGTGGTATTAACTCAAGACACTTTAGAGGTGAACACACTTATGTTCTAATATCTCAAAAGGGTTATTGGCAGATTGATGTTGGAGATGTTCTACTTGCAAATAGATCAACAGGAAAGGCTATTCAAGAAgaggaagaagaagaagaagaaaaagaagaacctccgtatgcgaatttggaagaagaagaaggaggaggagaagaagaagaaggaggaggagaagaagAAGAACTTATGTGTGCGAATTTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAAAATTCAATTTTGTGTAGCATTAATGTTTTGACTGCGATTATGTGCTATTGTATTGCGATCGTAGCTCTAAGTGACAAATGGAAAATTCTATGA 1446 0.2531 MDWRKVRTKDKVYNECVKEMFHFDEDSRGIIKHNFSIITIVKRQRRNVRKMLRIDQSNFTPILADRKACRNDKEGELYLLTHKRPNGSYIHDAARAIGERIEAIEQRDESSRLLSQNDSLAQALGKEHSDRVRGMGLGPTSSQVFGTILLISSPTLILRCRHHGCAAVTPFARAACRSFSADVDAKIAQAGVPKKRTFKKFSFRGVDLDALLTCAPMNSLNSSLFVLAEGFSAILCYFHSKYKSKISITYTEIGTSCKIPYGHGSIYRFFSQDVVKVRDIIIKDQLFAESTKEGSLALLALHDDGILGLEFEDISIGEVTPVWYNIIDQGYIYQNVFSLCLNKDPMAEIEGEIVIGGINSRHFRGEHTYVLISQKGYWQIDVGDVLLANRSTGKAIQEEEEEEEEKEEPPYANLEEEEGGGEEEEGGGEEEELMCANLEEEEEEEEEEEEKNSILCSINVLTAIMCYCIAIVALSDKWKIL 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01703 481 Gene3D Acid Proteases 135 402 IPR021109 -
Aip09g01703 481 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 231 394 - -
Aip09g01703 481 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 231 394 IPR001461 GO:0004190|GO:0006508
Aip09g01703 481 MobiDBLite consensus disorder prediction 393 450 - -
Aip09g01703 481 SUPERFAMILY Acid proteases 222 392 IPR021109 -
Aip09g01703 481 Coils Coil 428 458 - -
Aip09g01703 481 ProSiteProfiles Peptidase family A1 domain profile. 200 481 IPR033121 -
Aip09g01703 481 Pfam Eukaryotic aspartyl protease 224 392 IPR033121 -
Aip09g01703 481 MobiDBLite consensus disorder prediction 398 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01703 Aip-Chr9 40391050 40405940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01703 181 212 Cytoplasmic Ribosomal Protein Gene Family AT1G04270 78.125 1.50e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01703 K08245 - gmx:100782139 234.187