Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01682 ATGGAGAGTAACAGTAGAAGTAGTAGTAATAATGAGGATATGAGTTTGCCGATTGCAAATGTGGGAAGAATAATGAAGCAAGTGGTGCCAGGAAGTGGAAAGATCTCAAAAGAAGGGAAGCAGTTAATGCAAGAGTGCGTGACAGAGTTCATAAGCTTTGTTACGGGTGAGGCCTCTGCCAAGTGTCACAAGGAGAATCGAAAGACGGTTAACGGCGACGACATCTGCTGGGCGCTTTCTTCCTTAGGGTTTGACAACTTCGCCGAGGCCATCTCCAGGTACTTGTATAAATACCGCCTTGCTCACACTCACAGGGAACAAAACCTTCTTTCCAACAATAACAACAACAAAGACTAA 357 0.4482 MESNSRSSSNNEDMSLPIANVGRIMKQVVPGSGKISKEGKQLMQECVTEFISFVTGEASAKCHKENRKTVNGDDICWALSSLGFDNFAEAISRYLYKYRLAHTHREQNLLSNNNNNKD 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01682 118 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Aip09g01682 118 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 10 116 - -
Aip09g01682 118 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aip09g01682 118 SUPERFAMILY Histone-fold 12 109 IPR009072 GO:0046982
Aip09g01682 118 PRINTS CCAAT-binding transcription factor subunit A signature 43 61 - -
Aip09g01682 118 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Aip09g01682 118 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Aip09g01682 118 Gene3D Histone, subunit A 3 118 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01682 Aip-Chr9 39912088 39912444 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01682 11 117 CCAAT-HAP3 Transcription Factor Family AT1G09030 65.741 3.67e-49 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aip09g01682 CBFD_NFYB_HMF 1.1e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01682 K08065 - gmx:100815151 160.999