Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01671 ATGTCAAACATAACAAGTTGTGATAGTGGGAGCTTCTCAACAGAGAACACAGTTCCATTATTAGAAGATGCAGTGGTGAAACAACAATCTTCAGAGATTCTTGGTGGTAGGTTCCATCATAGTCCACATTCTCATACTTCAACAACAACAACAAATAATAAAAATAATAATAGCAATGCTTCCAACTCAAATTCTCAACCTCCTCCTCCACCTCCTAAGAAGAAAAGGAACCTACCGGGAAATCCAGATCCCAGTGCTGAAGTGATAGCTCTATCACCAACAACACTAATGGCCACAAACCGCTTCATATGCGAAATATGTAACAAAGGGTTTCAAAGAGACCAGAACCTTCAGCTTCATCGGCGAGGACACAACCTGCCGTGGAAGCTGAAGCAGCGAACGAGCACGGAGGTGAGAAAGAGAGTATATGTGTGTCCTGAGTCCTCGTGCGTTCACCACAATCCCGCGAGGGCGTTGGGTGACCTCACGGGGATCAAGAAACACTTTTGTAGGAAGCATGGTGAGAAAAAGTGGAAATGTGATAAGTGCTCAAAGAAATATGCTGTTCAATCTGACTGGAAGGCACATTCCAAAATATGCGGTACAAGGGAGTACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGATAGCTTCATCACCCACAGAGCATTCTGCGACGCACTTGCAGAGGAGAACAACAACAAGAACGAAGGATCATTATTCCCAAACATACCTTCAAATCTCCAATCCCAACCCCAAATCCCAAACCTCCTTCTTCCCTCTCTACCAATCACCACCACCCCCACCACTCTTTCTTCATCCTCCTCACTCCCTCTTCACCACGACCTCATCATTCCAAAACCCTCATTCAACAACATACCCTTCCCGAGAAACCCCAACACCACCTCCACCACCACCATCTTCGATGACAACGCCCTCCACTTAACTGCGTCGTCGTCATCACTGTCCTCGCCGCACATGTCAGCCACCGCACTGCTTCAGAAAGCAGCGCAAATGGGTGCAACCGTCAGCAGCAGCAACAACAACATAGTAGTGGAGAATAGCAACAAGGGTGGCGGTTATGTAACCGCCACAACAAGCATGGCGCCGCCATCGTTTAGCGGAGTAGCTCCAGTGCAACAGAATGTGAATAACAATAATAACAGTTTGTTCATGAACCAGTTCATGCAACAAGACATGGCTACTACTCCTCATCATTATGGTAATTTGATGTGTGGAATGAACGGTGTGGATATGTTCAACGCTATATTGGACCAAAGCAAGGCACTGTCCAAGATCATTGACCACAGTAACCACCACCGCGAAAGTGCGGTGACGAAAAGGGAGTGTACTAAGGGTGGAAGTATCGGGGGTAATAGTGATGTGATGACGTTGGACTTGTTGGGAATAGGAGGAGGCGGCGGCGGTGGACATAATGGAAGTGGTGGTTTCTATGGCGGTGGTAATAATAATAATAACCAGCAACAAGGAGATAATAATGGTGCAGCAAGTGTAAGAGATGAGGTTTGGAATTGGTCAACGAAGAACGCAGGTTTTGAATCCTTCTCAGCAACAAGCAGCATTTGA 1590 0.4642 MSNITSCDSGSFSTENTVPLLEDAVVKQQSSEILGGRFHHSPHSHTSTTTTNNKNNNSNASNSNSQPPPPPPKKKRNLPGNPDPSAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPESSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNNKNEGSLFPNIPSNLQSQPQIPNLLLPSLPITTTPTTLSSSSSLPLHHDLIIPKPSFNNIPFPRNPNTTSTTTIFDDNALHLTASSSSLSSPHMSATALLQKAAQMGATVSSSNNNIVVENSNKGGGYVTATTSMAPPSFSGVAPVQQNVNNNNNSLFMNQFMQQDMATTPHHYGNLMCGMNGVDMFNAILDQSKALSKIIDHSNHHRESAVTKRECTKGGSIGGNSDVMTLDLLGIGGGGGGGHNGSGGFYGGGNNNNNQQQGDNNGAASVRDEVWNWSTKNAGFESFSATSSI 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01671 529 MobiDBLite consensus disorder prediction 31 86 - -
Aip09g01671 529 SMART c2h2final6 178 198 IPR013087 -
Aip09g01671 529 SMART c2h2final6 143 173 IPR013087 -
Aip09g01671 529 SMART c2h2final6 102 124 IPR013087 -
Aip09g01671 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 124 IPR013087 -
Aip09g01671 529 Gene3D Classic Zinc Finger 81 151 - -
Aip09g01671 529 MobiDBLite consensus disorder prediction 41 63 - -
Aip09g01671 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 47 474 - -
Aip09g01671 529 MobiDBLite consensus disorder prediction 64 78 - -
Aip09g01671 529 SUPERFAMILY beta-beta-alpha zinc fingers 101 198 IPR036236 -
Aip09g01671 529 Pfam Zinc-finger double-stranded RNA-binding 102 124 IPR022755 -
Aip09g01671 529 MobiDBLite consensus disorder prediction 482 502 - -
Aip09g01671 529 MobiDBLite consensus disorder prediction 485 502 - -
Aip09g01671 529 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Aip09g01671 529 Gene3D Classic Zinc Finger 156 236 - -
Aip09g01671 529 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 47 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01671 Aip-Chr9 38355801 38364161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01671 48 345 IDZ Gene Family AT3G50700 54.467 6.30e-115 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip09g01671 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01671 - - adu:107465334 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00577 06 7568514 7569866 Aip09g01671 09 38355801 38364161 ECH
Aip09g01671 09 38355801 38364161 Aip09g01671 09 38355801 38364161 ECH
Aip06g00939 06 13160674 13163947 Aip09g01671 09 38355801 38364161 PCT