Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01649 ATGGTTGAGTTCTTGAGCACCATCTTCTTCTCATTTCAGTGCTTCGGGCGAAGAAAAATGGCTAGACGGTCTAGTCGCACAATTTATGTTGGCAATCTTCCTGGCGATGTTCGCTTGAGGGAAGTAGAGGATCTTTTCTACAAGTTTGGTCCTATTGTTGACATTGATCTGAAGATTCCTCCGAGACCACCAGGTTATGCCTTTGTGGAGTTTGAGGATATCCGTGATGCTGAAGATGCCATTTACTATAGAGATGGTTACAACTTTGATGGTTTTCGGTTACGGGTTGAACTTGCACACGGTGGACGGGGTCATACATCATCAGTAGACCGCTATAGTAGCTATAGTGGTAGTAGCAGTAGCCGTGGAGTTTCCAGGCGTTCCGATTATCGTGTTCTTGTAACAGGATTACCCCCTTCTGCTTCATGGCAAGACCTGAAAGATCATATGCGAAGAGCTGGTGATGTGTGTTTTTCTCAAGTCTTCCGTGAGCGTGGTGGTATGACTGGGATAGTGGATTATACAAATTATGATGACATGAAATATGCTATAAGGAAGCTTGATGACTCGGAATTCAGAAATGCCTTTTCTCGGTCATACATACGGGTCAGAGAATATGATCGCCGGAGTTATTCTAGAAGCCCCAGTCGTGATTCAAGGAGGAGCTATTCGAGAAGCCTCAGCCGCAGTCCATATGTGTCGCGAAGTCGAAGCTATAGTCAAAGCCCTAGCTATAGTGACAGGAGCAGAAGTTGGTCTCCAAAACCAAAGCATTCTCGGCGTTCGTTATCTCGCTCAAGGTCAGTTTCTACCTAG 816 0.4559 MVEFLSTIFFSFQCFGRRKMARRSSRTIYVGNLPGDVRLREVEDLFYKFGPIVDIDLKIPPRPPGYAFVEFEDIRDAEDAIYYRDGYNFDGFRLRVELAHGGRGHTSSVDRYSSYSGSSSSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRSYIRVREYDRRSYSRSPSRDSRRSYSRSLSRSPYVSRSRSYSQSPSYSDRSRSWSPKPKHSRRSLSRSRSVST 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01649 271 MobiDBLite consensus disorder prediction 207 271 - -
Aip09g01649 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 194 IPR000504 GO:0003723
Aip09g01649 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 95 IPR000504 GO:0003723
Aip09g01649 271 MobiDBLite consensus disorder prediction 207 224 - -
Aip09g01649 271 Gene3D - 130 207 IPR012677 -
Aip09g01649 271 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 22 270 - -
Aip09g01649 271 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 22 270 - -
Aip09g01649 271 MobiDBLite consensus disorder prediction 103 124 - -
Aip09g01649 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Aip09g01649 271 MobiDBLite consensus disorder prediction 225 250 - -
Aip09g01649 271 CDD RRM1_SF2_plant_like 27 98 - -
Aip09g01649 271 SMART rrm1_1 27 97 IPR000504 GO:0003723
Aip09g01649 271 SMART rrm1_1 131 202 IPR000504 GO:0003723
Aip09g01649 271 Gene3D - 16 129 IPR012677 -
Aip09g01649 271 SUPERFAMILY RNA-binding domain, RBD 24 195 IPR035979 GO:0003676
Aip09g01649 271 MobiDBLite consensus disorder prediction 107 124 - -
Aip09g01649 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 101 IPR000504 GO:0003723
Aip09g01649 271 CDD RRM2_SF2_plant_like 130 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01649 Aip-Chr9 36550864 36554646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01649 22 99 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 4.02e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01649 K12890 - gmx:100794282 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01649 09 36550864 36554646 Aip09g01649 09 36550864 36554646 ECH