Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01602 atgggccttgttcgcctgGACATTTTGAATGCTTTAAGAATCCCCCATGCACTTGTTCTTGAAAGAAGTTTTGACAGACCAAACTTAAAGTATGAAGTGATTGCAAAGACTAAGGAACCGCTGAAGCAGCTGGGACAGCTGCTAGTGGATCGTTTCAGGAATCAGTGTGGAATTGTTTACTGCCTCTCGAAAAGTGAATGTGTCGAGGTCTCAAAATTTTTGAATGAGACATGTCAGACTAAAACAGCGTATTACCATGCTGGCATGGCTGCCCGCCAAAGAGTTGCTGTTCAAAGGAAATGGCATGATGGAGAGGTTCATGTTGTCTGTGCAACTATTGCTTTCGGAATGGGGATAGACAAATCTGATGTTCGCTTCGTTGTCCATAATACAATGTCAAAATCAGTTGAAAGTTATTATCAAGAATCAGGAAGGGCCGGAAGGGATAATCTTCCTGCAGTTTGCATTGTATTGTACCAGAAGAAGGATTTCAGCCGAGTAGTATGCATGATAAGAAATGGTCAAGGATATAAAAAGGAGAGCTTTAAGACAGCAATGGATCAAGCGAAAAAGATGCAACAGTACTGTGAACTTAAGGTTGAATGTCGGAGACAAACTTTACTCAAACACTTCGGAGAATCTTTTGACAGAAAAGGCTGCAAGGAAGAGTCTTCATGTGGGGAATATCGAAGACATGCATCTATGCTTTATGCGATCGTGGCTTTTTGCACTCTATACATAGTGTGGGGTTTAGCCCTGACATGTCCTACAAGTTCTTTCTATCAGAGTAACATCCGAGCCCTGGGACATTATGTCGTTGTAGTTCAGGATGCGCCCTTTAGTTCATTGGAGGTCGAGCCTTTTGAGGAGATACCTTCTTGGGTAGACCAATTGGAGGTGGACTTAACTTCTGATGGTTCGGATTCTGGGAAGGTAGGAAGAGTACTAGGAGAATCCCTTGATGATCATCCTTGA 975 0.4174 MGLVRLDILNALRIPHALVLERSFDRPNLKYEVIAKTKEPLKQLGQLLVDRFRNQCGIVYCLSKSECVEVSKFLNETCQTKTAYYHAGMAARQRVAVQRKWHDGEVHVVCATIAFGMGIDKSDVRFVVHNTMSKSVESYYQESGRAGRDNLPAVCIVLYQKKDFSRVVCMIRNGQGYKKESFKTAMDQAKKMQQYCELKVECRRQTLLKHFGESFDRKGCKEESSCGEYRRHASMLYAIVAFCTLYIVWGLALTCPTSSFYQSNIRALGHYVVVVQDAPFSSLEVEPFEEIPSWVDQLEVDLTSDGSDSGKVGRVLGESLDDHP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01602 324 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 40 193 IPR001650 -
Aip09g01602 324 PANTHER BLOOM SYNDROME PROTEIN 4 223 - -
Aip09g01602 324 Pfam RecQ zinc-binding 162 222 IPR032284 -
Aip09g01602 324 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 223 - -
Aip09g01602 324 Pfam Helicase conserved C-terminal domain 43 149 IPR001650 -
Aip09g01602 324 MobiDBLite consensus disorder prediction 303 324 - -
Aip09g01602 324 Gene3D - 26 229 IPR027417 -
Aip09g01602 324 CDD SF2_C_RecQ 26 159 - -
Aip09g01602 324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 238 IPR027417 -
Aip09g01602 324 SMART helicmild6 68 150 IPR001650 -
Aip09g01602 324 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 4 228 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01602 Aip-Chr9 33663095 33668207 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01602 39 172 Eukaryotic Initiation Factors Gene Family AT5G11200 27.612 7.35e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01602 K10899 - aip:107615323 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01602 09 33663095 33668207 Aip09g01602 09 33663095 33668207 ECH